VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Wed Apr 05 2006 - 21:47:21 CDT

Hi,
  You'll want to check your PDB file atom and segment IDs, see these
related discussions on the NAMD-L list:
  http://www.ks.uiuc.edu/Research/namd/mailing_list/namd-l/1454.html

  John Stone
  vmd_at_ks.uiuc.edu

On Mon, Apr 03, 2006 at 05:16:01PM +0900, Taeho Kim wrote:
> Dear, all.
>
>
> When I made a segment to make a .psf file, I met a error like below.
>
> ================================
> vmd > segment NE {
> ? first NONE
> ? last NONE
> ? pdb neurospora1.pdb
> ? }
> building segment NE
> setting patch for first residue to NONE
> setting patch for last residue to NONE
> reading residues from pdb file neurospora1.pdb
> extracted 283 residues from pdb file
> Info: generating structure...
> Info: skipping improper N-C-CA-HN at beginning of segment.
> Info: skipping conformation C-N-CA-C at beginning of segment.
> Info: skipping conformation C-CA-N-HN at beginning of segment.
> Info: skipping bond C-N at end of segment.
> Info: skipping improper C-CA-N-O at end of segment.
> Info: skipping conformation CA-C-N-CA at end of segment.
> Info: skipping conformation N-CA-C-O at end of segment.
> Info: skipping conformation N-CA-C-N at end of segment.
> Info: segment complete.
> =================================
>
> Please let me know the reason or solvation.
>
> Thank you very much in advance.
>
> =====
> Taeho Kim(±èÅÂÈ£) 

-- 
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