VMD-L Mailing List

From: leila karami (karami.leila1_at_gmail.com)
Date: Sat Mar 12 2011 - 03:19:52 CST

Hello,

I want to calculate hydrogen bond lifetimes through trajectory.

I started VMD then loaded trajectory (e.g. file.xyz and history), at last i
selected *Extensions: Analysis: Timeline* from "VMD Main" window to
calculate: Calc H-bonds, but it can’t show hydrogen bond lifetimes through
trajectory.

Time line couldn’t find a sequence in this molecule.

Can Timeline recognize *.trr or *.xyz or HISTORY as input file?

Best wishes,