VMD-L Mailing List

From: Joaquim Rui de Castro Rodrigues (joaquim.rodrigues_at_ipleiria.pt)
Date: Thu Jun 12 2014 - 12:36:46 CDT

Hi,

You are calling vmd in text mode; remove "-dispdev text" from your command and try again.

Hope this helps,
Rui

________________________________________
De: owner-vmd-l_at_ks.uiuc.edu [owner-vmd-l_at_ks.uiuc.edu] Em Nome De Vasumathi Velachi [vas_at_fc.up.pt]
Enviado: quinta-feira, 12 de Junho de 2014 17:33
Para: vmd-l_at_ks.uiuc.edu
Assunto: vmd-l: Viewing SASA points through draw command-problem

Dear All
I have used the point flag to store the samples into a variable and
used the draw command to view the points.
Please find the script which i used for the above
....
set pro [atomselect top "protein"]
set lys [atomselect top "resname LYS"]
set sasa [measure sasa 1.4 $pro -points pts -restrict $lys]
puts "The SASA is $sasa"
foreach pt $pts {
draw point $pt
}

I used the following command to execute the above script
vmd -dispdev text filename.pdb -e sasa.tcl
  It prints the sasa value but not showing any plot to see the area.
Did I missed anything?

Thanking you in advance 

--
Vasumathi Velachi