VMD-L Mailing List

From: Vlad Cojocaru (vlad.cojocaru_at_mpi-muenster.mpg.de)
Date: Thu Oct 30 2014 - 09:15:20 CDT

This would be one option ... However, I realized that cpptraj create
pseudo trajectories for each mode which can individually be loaded in
VMD without any additional plugin

Best,
Vlad

On 10/30/2014 02:41 PM, John Stone wrote:
> You can probably still used IED, but IED is written in an older
> version of Python, so you'd just have to compile IED against a
> (compatible) older Python. I believe that Jerome Henin had patched
> IED at one point and gotten it (largely?) working with current
> versions of Python, but I don't know where that work left off.
>
> Cheers,
> John Stone
> vmd_at_ks.uiuc.edu
>
> On Thu, Oct 30, 2014 at 10:38:51AM +0100, Vlad Cojocaru wrote:
>> Dear all,
>>
>> I have been using in the past the IED plugin to visualize essential
>> dynamics in VMD. However, this only works with older versions of VMD. Is
>> there any alternative in VMD to visualize modes created using the
>> CPPTRAJ program of Amber ?
>>
>> Thanks
>> Vlad
>>
>> --
>> Dr. Vlad Cojocaru
>> Computational Structural Biology Laboratory
>> Department of Cell and Developmental Biology
>> Max Planck Institute for Molecular Biomedicine
>> Röntgenstrasse 20, 48149 Münster, Germany
>> Tel: +49-251-70365-324; Fax: +49-251-70365-399
>> Email: vlad.cojocaru[at]mpi-muenster.mpg.de
>> http://www.mpi-muenster.mpg.de/research/teams/groups/rgcojocaru 

-- 
Dr. Vlad Cojocaru
Computational Structural Biology Laboratory
Department of Cell and Developmental Biology
Max Planck Institute for Molecular Biomedicine
Röntgenstrasse 20, 48149 Münster, Germany
Tel: +49-251-70365-324; Fax: +49-251-70365-399
Email: vlad.cojocaru[at]mpi-muenster.mpg.de
http://www.mpi-muenster.mpg.de/research/teams/groups/rgcojocaru