VMD-L Mailing List

From: Qasim Pars (qasimpars_at_gmail.com)
Date: Tue Jun 28 2016 - 19:31:58 CDT

Dear users,

I wanted to get the secondary structure graph of a trajectory file (.xtc)
using VMD. For that I used VMD timeline
(Extensions-Analysis-Timeline-Caculate-Calc.Sec.Struct.) but it was very
complex and couldn't get what I wanted

As a matter of fact, I would like to get the secondary structure graph of
SOME residues (not all of them in protein structure) but it is not easy
with VMD timeline. Does anyone have a VMD or any script to get the
secondary structure graph of SOME residues in the trajectory file (.xtc) as
a function time?

Any helps will be appreciated. 

-- 
Qasim Pars