VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Fri Feb 17 2012 - 10:17:12 CST

Hi,
  I too would suspect that you ran out of memory for the 32-bit Windows
version of VMD. Try changing the "stride" value in the file loader to
something like 10 and see if you are able to load the trajectory skipping
9 out of every 10 frames.

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu

On Fri, Feb 17, 2012 at 10:38:26AM -0500, Axel Kohlmeyer wrote:
> On Fri, Feb 17, 2012 at 9:54 AM, Turgay Cakmak <turgaycakmak34_at_gmail.com> wrote:
> > Hi all,
> >
> > I carried out the 120 ns simulation using Gromacs 4.5.4. Now, I want to
> > visualize whole trajectory (only peptides, not water molecules) at VMD.
> >
> > But, I encountered the following runtime error.
> >
> >
> > Runtime error!
> >
> > Program: C:\Program Files\University of Illinois\VMD\vmd.exe
> >
> > abnormal program termination
> >
> >
> >
> > What could be the reason? I appreciate any help in advance.
>
> too much simulation data for 32-bit?
>
> axel.
>
>
> >
> > Turgay
>
>
>
> --
> Dr. Axel Kohlmeyer
> akohlmey_at_gmail.com  http://goo.gl/1wk0
>
> College of Science and Technology
> Temple University, Philadelphia PA, USA. 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
http://www.ks.uiuc.edu/~johns/           Phone: 217-244-3349
http://www.ks.uiuc.edu/Research/vmd/       Fax: 217-244-6078