VMD-L Mailing List

From: Peter Freddolino (petefred_at_ks.uiuc.edu)
Date: Mon Nov 10 2008 - 17:30:19 CST

Just a note, if you want to use the molefacture protein builder you will
probably want to use the 1.8.7 alpha build available through biocore,
since there have been a lot of recent improvements.
Best,
Peter

Eric H. Lee wrote:
> I'd give the molefacture plugin in VMD a try.
>
> -Eric
>
> On Nov 10, 2008, at 2:33 PM, Roman Petrenko wrote:
>
>> Hi all,
>> what is the most commong way to generate a dummy pdb file from amino
>> acid sequence along? Looks like everyone is using his own code.
>>
>> --
>> Roman Petrenko.
>> Physics Department
>> University of Cincinnati
>
> Eric H. Lee
>
> Medical Scholars Program
>
> Theoretical and Computational Biophysics Group, UIUC
>
> ericlee_at_ks.uiuc.edu <mailto:ericlee_at_ks.uiuc.edu>
>
>