From: Mo Rahman (
Date: Tue Oct 03 2017 - 08:29:13 CDT


After analysing the output of an MD simulation, I have obtained the frequencies of the vibrational modes of the system as well the Cartesian components of the force and torque vectors for each heavy atom.

Given this information, in particular the force and torque data, is there a way for me to use VMD to create an animation of each of the vibrational modes? I'm only familiar with the basic functionality of the software and I have no idea where to begin.

Thanks in advance!