VMD-L Mailing List

From: Alberto Perez (raist_at_mmb.pcb.ub.es)
Date: Thu Mar 06 2008 - 04:38:02 CST

Hi Leandro,
you could probably use something like:

same residue as within 5. of segname LIG

Hope it helps,
cheers,
Al.

----------------------------------------------------------------
Alberto Perez
Molecular Modeling & Bioinformatics group

IRBB Parc Cientific de Barcelona | e-mail:raist_at_mmb.pcb.ub.es
Universitat de Barcelona | phone: + 34 93 403 71 55
Josep Samitier,1-5 | FAX: + 34 93 403 71 57
08028 Barcelona (Spain) | phone BSC: +34 93 413 76 02

On Thu, 6 Mar 2008, Leandro Martínez wrote:

> I would like to select complete residues that contain some
> atom within a distance of some group. For example, I would like "see" the
> residues of the binding site of a protein, so I try to use
>
> within 5. of segname LIG
>
> (LIG being the ligand). But, of course, only a few atoms of
> each residue appear. Is there a practical way to show the
> complete residues instead?
>
> Thanks,
> Leandro.
>