VMD-L Mailing List

From: Ashar Malik (asharjm_at_gmail.com)
Date: Fri Aug 13 2021 - 07:20:50 CDT

Not all things come pre-packed with VMD.
Some you have to manually set up.

Is this what you are looking for?

https://urldefense.com/v3/__https://github.com/limresgrp/FMAP_v1__;!!DZ3fjg!vV0Ryn1p9KKc6G5pYC0Em39iN_c-eTU5PRRSu3Zvrc2En9BNKZJJ6d-vA5CcIXccRg$

On Fri, 13 Aug 2021 at 7:43 PM, Prithwish Nandi <nandi.prithwish_at_gmail.com>
wrote:

> Hi,
> I have seen a paper and youtube tutorial that describes how to model
> funnel metadynamics using VMD.
> Links are here: https://urldefense.com/v3/__https://www.nature.com/articles/s41596-020-0342-4.pdf__;!!DZ3fjg!vV0Ryn1p9KKc6G5pYC0Em39iN_c-eTU5PRRSu3Zvrc2En9BNKZJJ6d-vA5CTFDVhfA$
> <https://urldefense.com/v3/__https://www.nature.com/articles/s41596-020-0342-4.pdf__;!!DZ3fjg!psj6AnfYyjXgd-a5dMzXZMS5zzSQv446klzpbw5u63OMxOJt13K6FpNxcl1mXBtaFQ$>
>
> https://urldefense.com/v3/__https://www.youtube.com/watch?v=usalRn6jNQo__;!!DZ3fjg!vV0Ryn1p9KKc6G5pYC0Em39iN_c-eTU5PRRSu3Zvrc2En9BNKZJJ6d-vA5DUbHvCgA$
> <https://urldefense.com/v3/__https://www.youtube.com/watch?v=usalRn6jNQo__;!!DZ3fjg!psj6AnfYyjXgd-a5dMzXZMS5zzSQv446klzpbw5u63OMxOJt13K6FpNxcl25KhER_Q$>
>
>
> I am using VMD 1.9.4a in Mac.
> I couldn't find any such plugin or the video/funnel.tcl script as shown in
> this youtube video.
> Has anyone of you ever used funnel metadynamics using VMD?
>
> Thanks,
> Prithwish
>
>