VMD-L Mailing List
From: John Stone (johns_at_ks.uiuc.edu)
Date: Fri Aug 12 2011 - 09:39:51 CDT
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Do this:
mol new myfile.psf waitfor all
mol addfile myfile.pdb waitfor all
set sel [atomselect top all]
$sel writepdb newfile.pdb
Cheers,
John Stone
vmd_at_ks.uiuc.edu
On Fri, Aug 12, 2011 at 12:29:38PM +0300, matziast_at_med.uth.gr wrote:
> Hi,
> I would like to write a script for VMD, but I can't. I would like to:
> load a psf file and
> load data into molecule
> load a pdb file and
> save the coordinates in a new file.
> I used the command mol load psf myfile.psf pdb myfile.pdb
> writepdb myfile.pdb
> but the final file didn't have proper coordinates.
> If anyone can help me, I would appreciate it.
> Thank you in advance.
-- NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801 http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349 http://www.ks.uiuc.edu/Research/vmd/ Fax: 217-244-6078
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