VMD-L Mailing List

From: Raj Gupta (rajgupta121_at_gmail.com)
Date: Thu May 05 2005 - 07:31:56 CDT

Hi,
My system consists of large number of two different species of
molecules. I want to
to study the orientational order of one particular type of molecule. I
need to define a molecular axis and determine its tilt with respect to
say Z axis. Finally I want to see the distribution of
tilt by plotting a histogram. Can it be possible to using VMD?
Otherwise, I have to extract the coordinates from huge pdb files and
determine the tilt externally and see the distribution. This is
laborious and time consuming.
Thanks in advance.

--Raj