VMD-L Mailing List

From: Muhammad tariq (tariqchemist112_at_gmail.com)
Date: Sat Jun 06 2020 - 09:58:00 CDT

Hi developers of VMD <http://www.ks.uiuc.edu/Research/vmd/>,
Hope you all are fine. I am going to apply an implicit ligand sampling
method (ILS) on my biological system. I generated amber force field
parameters, using these parameters I created .dcd trajectory files by
NAMD.
my question is, can i use these amber parameters for ILS method? if yes
then how? is there any script available?
thanks in advance for your help.
Muhammad Tariq,
research scholer,
HEJ Reasearch institute of chemistry,
International center for chemical and biological sciences, University of
karachi,Karachi..