VMD-L Mailing List

From: sajad falsafi (sajad.falsafi_at_yahoo.com)
Date: Wed Oct 19 2011 - 01:11:39 CDT

hi, you can use the "measure angle" command. "measure angle {{<atomid1> [<molid1>]} {<atomid2> [<molid2>]} {<atomid3> [<molid3>]}} [molid <default molid>] [frame <frame|all|last> | first <first> last <last>]" Sajad Falsafi $ Zahra Karimi ----- Forwarded Message ----- >From: Axel Kohlmeyer <akohlmey_at_gmail.com> >To: Peyman Z.Moghadam <p.moghadam_at_ed.ac.uk> >Cc: vmd-l_at_ks.uiuc.edu >Sent: Tuesday, October 18, 2011 9:52 PM >Subject: Re: vmd-l: angle calculation trajectory > >On Tue, Oct 18, 2011 at 1:28 PM, Peyman Z.Moghadam <p.moghadam_at_ed.ac.uk> wrote: >>  Dear vmd users, >> >> I've got a trajectory of my molecules and i'd like to calculate the >> angle between three specific atoms within the molecules for each >> configuration and average it. >> Could i do this with vmd? > >yes. > > >> >> Thanks, >> >> P. Moghadam >> >> -- >> The University of Edinburgh is a charitable body, registered in >> Scotland, with registration number SC005336. >> >> > > > >-- >Dr. Axel Kohlmeyer >akohlmey_at_gmail.com  http://goo.gl/1wk0 > >Institute for Computational Molecular Science >Temple University, Philadelphia PA, USA. > > > >