VMD-L Mailing List

From: Axel Kohlmeyer (akohlmey_at_gmail.com)
Date: Tue Aug 10 2010 - 23:28:11 CDT

On Tue, Aug 10, 2010 at 10:53 PM, Charles Zhao <cicero225_at_yahoo.com> wrote:
> Is there a difference between the density of water produced by the windows
> and linux versions of the solvate plugin? What about between the different
> recent versions of vmd?

no. the water restart template has not changed.

> I ask because I'm encountering a new problem in namd where my water settles
> in a sphere and there seems to be a large vacuum around it, even though the
> periodic cell I've made should not be anywhere near that large, and I
> suspect for some reason the new systems I've made somehow have less dense
> water, because I have not changed my procedures at all from the past.

check your input. typos can happen very easily... ;)

axel
>
> 

-- 
Dr. Axel Kohlmeyer    akohlmey_at_gmail.com
http://sites.google.com/site/akohlmey/
Institute for Computational Molecular Science
Temple University, Philadelphia PA, USA.