VMD-L Mailing List

From: Ramya Gamini (ramyabhargavi_at_gmail.com)
Date: Tue Jan 06 2009 - 12:27:22 CST

Hi JohnDid you try the following ?! In the VMD main Console go to
Graphics->Colors->Categories->Labels
Labels have different options under Names. In your case, you may chose Bonds
and color them accordingly.
I guess this is what you are looking for.
best
Ramya

On Tue, Jan 6, 2009 at 11:39 AM, <jfgaff_at_ncsu.edu> wrote:

> Dear all,
>
> I have ran into a representation problem which hopefully someone can help
> me with. I've inserted a 4-bromophenol residue into my protein and wish to
> render an image. The problem is that bromine is by default white, so the
> color of the bond between the carbon and bromine is cyan-white. I need
> this bond to be colored cyan-tan, but not sure as to how to do this. I've
> tried stacking multiple representations but cannot obtain anything better
> then a carbon-bromine bond to appear all tan, not cyan-tan. Any
> suggestions?
>
> Cheers!
> John
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