VMD-L Mailing List

From: Chris Harrison (charris5_at_gmail.com)
Date: Thu May 19 2011 - 21:37:36 CDT

First, have you checked that pot.dx really exists in "C:/Archivos de
programa/University of Illinois/VMD/1MYK/apbs.93162"?

Second, have you tried renaming directories such that they don't contain spaces?

On Thu, May 19, 2011 at 8:51 PM, Ramon Garduno-Juarez
<unam.rgj_at_gmail.com> wrote:
> Dear all:
>
>    When I used the APBS Tool in VMD main window and tried to run the APBS
> calculation, but I got the following error message:
>
>    apbsrun> Cannot access output file C:/Archivos de programa/University of
> Illinois/VMD/1MYK/apbs.93162/pot.dx
>
>    What does this message mean?
>    In the Settings window, I set working directory is C:/Archivos de
> programa/University of Illinois/VMD/1MYK,
>        and APBS Location is C:/Archivos de programa/apbs-1.2.1/bin/apbs.exe.
>
>    Plus in the APBSRun error window I get "APBSRun: output files missing or
> unreadable"
>
>    Am I doing anything wrong?
>
>    Looking forward to hearing from you,
>
>    Ramon Garduno
>
> --
> Dr. Ramón Garduño-Juárez
> Research Professor in Biophysics
> Instituto de Ciencias Físicas
> Universidad Nacional Autónoma de México
> Ph. +52(777)329-1749 / +52(55)5622-7749
> Email unam.rgj_at_gmail.com
>             ramon_at_fis.unam.mx
> URL: http://www.fis.unam.mx/~ramon
> 

-- 
Chris Harrison, Ph.D.
Theoretical and Computational Biophysics Group
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave., Urbana, IL 61801
char_at_ks.uiuc.edu                            Voice: 217-244-1733
http://www.ks.uiuc.edu/~char               Fax: 217-244-6078