VMD-L Mailing List

From: Ramon Garduno-Juarez (unam.rgj_at_gmail.com)
Date: Fri May 20 2011 - 12:18:48 CDT

Hi Chris,

Thank you for your prompt answer...

----Have you checked that pot.dx really exists in "C:/Archivos de
programa/University of Illinois/VMD/1MYK/apbs.93162"?

Yes, in fact pot.dx does not appear anywhere under the VMD directory...

----Have you tried renaming directories such that they don't contain spaces?

Now I have done that... I reinstalled VMD in C:/VMD/ and everything is done
correctly...

THANK YOU!

Sincerely,
Ramon Garduno

2011/5/19 Chris Harrison <charris5_at_gmail.com>

> First, have you checked that pot.dx really exists in "C:/Archivos de
> programa/University of Illinois/VMD/1MYK/apbs.93162"?
>
> Second, have you tried renaming directories such that they don't contain
> spaces?
>
>
> On Thu, May 19, 2011 at 8:51 PM, Ramon Garduno-Juarez
> <unam.rgj_at_gmail.com> wrote:
> > Dear all:
> >
> > When I used the APBS Tool in VMD main window and tried to run the APBS
> > calculation, but I got the following error message:
> >
> > apbsrun> Cannot access output file C:/Archivos de programa/University
> of
> > Illinois/VMD/1MYK/apbs.93162/pot.dx
> >
> > What does this message mean?
> > In the Settings window, I set working directory is C:/Archivos de
> > programa/University of Illinois/VMD/1MYK,
> > and APBS Location is C:/Archivos de
> programa/apbs-1.2.1/bin/apbs.exe.
> >
> > Plus in the APBSRun error window I get "APBSRun: output files missing
> or
> > unreadable"
> >
> > Am I doing anything wrong?
> >
> > Looking forward to hearing from you,
> >
> > Ramon Garduno
> >
> > --
> > Dr. Ramón Garduño-Juárez
> > Research Professor in Biophysics
> > Instituto de Ciencias Físicas
> > Universidad Nacional Autónoma de México
> > Ph. +52(777)329-1749 / +52(55)5622-7749
> > Email unam.rgj_at_gmail.com
> > ramon_at_fis.unam.mx
> > URL: http://www.fis.unam.mx/~ramon
> >
>
>
>
> --
> Chris Harrison, Ph.D.
> Theoretical and Computational Biophysics Group
> NIH Resource for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave., Urbana, IL 61801
>
> char_at_ks.uiuc.edu Voice: 217-244-1733
> http://www.ks.uiuc.edu/~char Fax: 217-244-6078
> 

-- 
Dr. Ramón Garduño-Juárez
Research Professor in Biophysics
Instituto de Ciencias Físicas
Universidad Nacional Autónoma de México
Ph. +52(777)329-1749 / +52(55)5622-7749
Email unam.rgj_at_gmail.com
            ramon_at_fis.unam.mx
URL: http://www.fis.unam.mx/~ramon