VMD-L Mailing List

From: Gianluca Interlandi (gianluca_at_u.washington.edu)
Date: Wed Sep 29 2010 - 16:54:50 CDT

Yes, sorry.

Gianluca

On Wed, 29 Sep 2010, Richard Cook wrote:

> You meant "glxgears"
>
> On Sep 29, 2010, at 1:18 PM, Gianluca Interlandi wrote:
>
>> Hi Trinh,
>>
>> Thanks for sharing this information. Can you please type in a terminal:
>> glxgear
>>
>> then, wait 30 sec, then maximize the glxgear window, wait another 30 sec
>> and then send us the output?
>>
>> Thank you!
>>
>> Gianluca
>>
>> On Wed, 29 Sep 2010, TRINH Minh Hieu wrote:
>>
>>> Hi,
>>>
>>> I have a HP Mini 311c with Openuse 11.3, Xfce 4.6.2 and Windows XP
>>> SP3, that have
>>> Nvidia ION LE + Atom N270 (1.6GHz) + 2Go DDR3 Ram. *
>>>
>>> The battery stand for aroung 4h-5h.
>>>
>>> I have Nvidia driver 256.35
>>>
>>> Here is what I have when launch vmd:
>>> Info) Multithreading available, 2 CPUs detected.
>>> Info) Free system memory: 1545MB (88%)
>>> Info) Detected 1 available CUDA accelerator:
>>> Info) [0] ION LE 2 SM_1.1 @ 1.10 GHz, 253MB RAM, KTO, ZCP
>>> Info) Creating CUDA device pool and initializing hardware...
>>> Warning) Detected X11 'Composite' extension: if incorrect display occurs
>>> Warning) try disabling this optional X server feature.
>>> Info) OpenGL renderer: ION LE/PCI/SSE2
>>> Info) Features: STENCIL MSAA(4) MDE CVA MTX NPOT PP PS GLSL(OVF)
>>> Info) Full GLSL rendering mode is available.
>>> Info) Textures: 2-D (8192x8192), 3-D (2048x2048x2048), Multitexture (4)
>>>
>>> On Linux, when I open the Fab structure 1AY1 of an antibody that have
>>> : 3282 atoms and 423 residus, with cache mode on, I got :
>>> 6 fps with VDW in normal mode and 12.5 fps in GLSL mode
>>> 4.8 fps with surf in normal mode and 24 fps in GLSL mode
>>>
>>> If you need more informations, I can do some more testing,
>>> Regards,
>>>
>>> M.H. Trinh
>>>
>>>>
>>>> Date: Sun, 26 Sep 2010 12:01:40 -0700 (PDT)
>>>> From: Gianluca Interlandi <gianluca_at_u.washington.edu>
>>>> Subject: vmd-l: Experience with Asus Netbook
>>>>
>>>> Hi!
>>>>
>>>> It might be a bit off topic. I wanted to ask whether anybody has had any
>>>> experience with the Asus EEE netbook:
>>>>
>>>> http://BLOCKEDwww.BLOCKEDnewegg.com/Product/Product.aspx?Item=N82E16834220805&cm_re=asus_eee-_-34-220-805-_-Product
>>>>
>>>> ASUS Eee PC 1215N-PU17-BK Black Intel Atom D525(1.80GHz) Dual Core 12.1"
>>>> WXGA 2GB Memory 250GB HDD NetBook
>>>>
>>>> In particular concerning the graphics card: Next-generation NVIDIA ION
>>>> graphics
>>>>
>>>> Has anybody tested it with glxgear, how many frames per second? Is it
>>>> enough to run VMD on it and display and smoothly rotate a molecule (a few
>>>> 100 AA) with SURF or VDW on? I plan to use it mainly for conference
>>>> presentations. Does it have openGL 3D acceleration?
>>>>
>>>> Thanks,
>>>>
>>>> Gianluca
>>>>
>>>> - -----------------------------------------------------
>>>> Gianluca Interlandi, PhD gianluca_at_u.washington.edu
>>>> +1 (206) 685 4435
>>>> http://BLOCKEDartemide.bioeng.washington.edu/
>>>>
>>>> Postdoc at the Department of Bioengineering
>>>> at the University of Washington, Seattle WA U.S.A.
>>>> - -----------------------------------------------------
>>>>
>>>> ------------------------------
>>>>
>>>> Date: Sun, 26 Sep 2010 21:36:52 -0700 (PDT)
>>>> From: Rob <spamrefuse_at_yahoo.com>
>>>> Subject: vmd-l: Re: plugin for Abinit output files
>>>>
>>>>> Hi Rob,
>>>>> I'm finally catching up on a long backlog of emails...
>>>>> I'm testing compiles of your plugin on multiple platforms presently.
>>>>> Can you send me some example ABINIT files I should be able to load with it?
>>>>> (either email, or post them on your web page in the same directory
>>>>> as the abinit plugin source code link you sent)
>>>>>
>>>>> As soon as I get past a few small compilation issues, I could
>>>>> then add the code to the VMD CVS tree. Are you agreeable with it
>>>>> being open source like the other VMD plugins?
>>>>>
>>>>> Cheers,
>>>>> John Stone
>>>>
>>>> It's in place:
>>>>
>>>> http://BLOCKEDskku.homeip.net/lahaye/vmd/
>>>>
>>>> there are the GEO and DEN files of the Silicon unit cell.
>>>>
>>>> GEO has the geometry.
>>>>
>>>> The DEN file has the charge density, but also the geometry is part
>>>> of the density header information. Therefore when you load the
>>>> charge density, you can use two representations for showing
>>>> the atoms (Drawing Method CPK) and the charge density
>>>> (Drawing Method Isosurface).
>>>>
>>>> Rob.
>>>>
>>>>
>>>>
>>>>
>>>> ------------------------------
>>>>
>>>> End of vmd-l digest V1 #1689
>>>> ****************************
>>>>
>>>>
>>>
>>>
>>>
>>> --
>>> ============================================
>>> M. TRINH Minh Hieu
>>> CEA, IBEB, SBTN/LIRM,
>>> Tél : 04 66 79 19 44
>>> F-30207 Bagnols-sur-Cèze, FRANCE
>>> ============================================
>>>
>>>
>>
>> -----------------------------------------------------
>> Gianluca Interlandi, PhD gianluca_at_u.washington.edu
>> +1 (206) 685 4435
>> http://BLOCKEDartemide.bioeng.washington.edu/
>>
>> Postdoc at the Department of Bioengineering
>> at the University of Washington, Seattle WA U.S.A.
>> -----------------------------------------------------
>
> --
> ?Richard Cook
> ? Lawrence Livermore National Laboratory
> Bldg-453 Rm-4024, Mail Stop L-557
> 7000 East Avenue, Livermore, CA, 94550, USA
> ? (office) (925) 423-9605
> ? (fax) (925) 423-6961
> ---
> Information Management & Graphics Grp., Services & Development Div., Integrated Computing & Communications Dept.
> (opinions expressed herein are mine and not those of LLNL)
>
>
>
>

-----------------------------------------------------
Gianluca Interlandi, PhD gianluca_at_u.washington.edu
                     +1 (206) 685 4435
                     http://artemide.bioeng.washington.edu/

Postdoc at the Department of Bioengineering
at the University of Washington, Seattle WA U.S.A.
-----------------------------------------------------