VMD-L Mailing List

From: andrea spitaleri (spitaleri.andrea_at_hsr.it)
Date: Wed Nov 23 2005 - 03:05:39 CST

Hi Axel,
apologies to all for this re-question.
In fact the distance S-S is quite larger than a "normal" S-S
I will work around as you suggest.

Thanks again

Regards,
andrea

Axel Kohlmeyer wrote:

>On Tue, 22 Nov 2005, andrea spitaleri wrote:
>
>
>andrea,
>
>please have a look at the mailing list archives.
>VMD does not (yet) honor CONECT records.
>
>the workarounds are:
>- you set the SS bond manually (e.g. from
> a selection or using the mouse)
>- you add a 'Dynamic Bonds' representation with
> a large enough cutoff for only SS-bridges
>- you (build and) load a .psf file.
> check out the autopsf plugin.
>
>axel.
>
>AS> Hi all,
>AS> I have a file.pdb with CONECT flag at the end giving the S-S connection
>AS> atom numbers. While in pymol or insight I can see the S-S bond,
>AS> in vmd it doesn't appear at all. I am wondering if it is a problem of
>AS> cutoff since the dist is quite large (0.25nm).
>AS> Any help??
>AS>
>AS> Regards,
>AS> Andrea
>AS>
>
>
> 

-- 
-------------------------------
Andrea Spitaleri
Dulbecco Telethon Institute
c/o DIBIT Scientific Institute
Biomolecular NMR, 1B4
Via Olgettina 58
20132 Milano (Italy)
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