From: Alexandre A. Vakhrouchev (makaveli.lcf_at_gmail.com)
Date: Fri May 16 2008 - 01:08:22 CDT

Thank you John!
That was the solution I was thinking of. BTW, why VMD and NAMD atom
indexing differs? First starts with "0" and the second from "1"? Is it
an "egg war"?))) I ask because recently have made huge simulation
pushing wrong atom)

2008/5/16 John Stone <johns_at_ks.uiuc.edu>:
>
> Hi,
> If I correctly interpret your question, it would seem that you
> want to load and display a reduced trajectory, along with a full system?
> If that's what you want to do, the easiest way to do this would be to
> load them into two independent molecules in VMD. You would then
> be able to display the full system as well as animate the reduced
> trajectory at the same time.
>
> Cheers,
> John Stone
> vmd_at_ks.uiuc.edu
>

-- 
Best regards,
Dr. Alexander Vakhrushev
Institute of Applied Mechanics
Dep. of Mech. and Phys.-Chem.
of heterogeneous mediums
UB of Russian Academy of Sciences
34 T. Baramzinoy St.
Izhevsk, Russia 426067