VMD-L Mailing List

From: aneesh cna (aneeshcna_at_gmail.com)
Date: Mon Nov 08 2010 - 07:06:33 CST

Dear VMD users,

        My simulation system contains DNA in a box of water. I would like to
count the number of water molecules within 5 angstrom around DNA ( or
specific atoms of DNA) over the trajectories. Can anyone help me with a
script to do this in VMD?

Thanks in advance

Sincerely
Aneesh