VMD-L Mailing List

From: Archana Sonawani-Jagtap (ask.archana_at_gmail.com)
Date: Thu Nov 24 2016 - 02:56:44 CST

Hi,

Sorry for misunderstanding..I tried installing
vmd-1.9.2.bin.LINUXAMD64.opengl.tar.gz in my laptop, but I still get this
error when I type vmd:

/usr/local/lib/vmd/vmd_LINUXAMD64: error while loading shared libraries:
libGLU.so.1: cannot open shared object file: No such file or directory

On Thu, Nov 24, 2016 at 1:02 PM, John Stone <johns_at_ks.uiuc.edu> wrote:

> Hi,
> I think you misunderstood about the approach to installing the
> 64-bit version. When you run the configure script, you should not be
> passing any parameters, otherwise it will look for files that don't exist
> in the binary distribution (thus all of the errors below). What I meant
> when I suggested that you install the LINUXAMD64 build of VMD, is that
> you need to start over, and go download one of the LINUXAMD64 tar files
> from the VMD web site and then install that using the standard install
> procedure for unix/linux.
>
> Cheers,
> John Stone
> vmd_at_ks.uiuc.edu
>
>
> On Thu, Nov 24, 2016 at 12:42:42PM +0530, Archana Sonawani-Jagtap wrote:
> > Hi,
> >
> > I tried ./configure LINUXAMD64, but still I get the following after
> make
> > install:
> >
> > if [ ! -d "/usr/local/lib/vmd" ]; then \
> > A A A mkdir -p "/usr/local/lib/vmd" ; \
> > fi ; \
> > if [ ! -d "/usr/local/bin" ]; then \
> > A A A mkdir -p "/usr/local/bin" ; \
> > fi ; \
> > if [ ! -d "/usr/local/lib/vmd"/doc ]; then \
> > A A A mkdir -p "/usr/local/lib/vmd"/doc; \
> > fi
> > cp ../AnnouncementA "/usr/local/lib/vmd"
> > cp ../READMEA A A A A A A "/usr/local/lib/vmd"
> > cp ../LICENSEA A A A A A "/usr/local/lib/vmd"
> > cp ../doc/ug.pdfA A A A A A A "/usr/local/lib/vmd"/doc
> > if [ -f /usr/local/lib/vmd/vmd_LINUXAMD64 ]; then \
> > A A A A A A A A A A mv -f "/usr/local/lib/vmd/vmd_LINUXAMD64"
> > "/usr/local/lib/vmd/OLD_vmd_LINUXAMD64" ; rm -f
> > "/usr/local/lib/vmd/OLD_vmd_LINUXAMD64" ; fi
> > cp ../LINUXAMD64/vmd_LINUXAMD64 "/usr/local/lib/vmd"
> > cp: cannot stat a**../LINUXAMD64/vmd_LINUXAMD64a**: No such file or
> > directory
> > make: [install] Error 1 (ignored)
> > if [ -d "../lib/redistrib/lib_LINUXAMD64" ]; then \
> > A A A cd ../lib/redistrib/lib_LINUXAMD64; tar -cf - ./* | \
> > A A A (cd "/usr/local/lib/vmd" ; tar -xf -) \
> > fi ;
> > cp ../lib/stride/stride_LINUXAMD64 ../lib/surf/surf_LINUXAMD64
> > ../lib/tachyon/tachyon_LINUXAMD64 "/usr/local/lib/vmd"
> > cp: cannot stat a**../lib/stride/stride_LINUXAMD64a**: No such file
> or
> > directory
> > cp: cannot stat a**../lib/surf/surf_LINUXAMD64a**: No such file or
> > directory
> > cp: cannot stat a**../lib/tachyon/tachyon_LINUXAMD64a**: No such
> file or
> > directory
> > make: [install] Error 1 (ignored)
> > cd ..; tar -cf - scripts | \
> > (cd "/usr/local/lib/vmd" ; tar -xf -)
> > cd ../lib; tar -cf - scripts | \
> > (cd "/usr/local/lib/vmd" ; tar -xf -)
> > cd ..; tar -cf - python | \
> > (cd "/usr/local/lib/vmd"/scripts ; tar -xf -)
> > cd ..; tar -cf - plugins | \
> > (cd "/usr/local/lib/vmd" ; tar -xf -)
> > cd ..; tar -cf - shaders | \
> > (cd "/usr/local/lib/vmd" ; tar -xf -)
> > if [ -f ../LINUXAMD64/OptiXShaders.ptx ]; then \
> > A A A cp ../LINUXAMD64/OptiXShaders.ptx
> "/usr/local/lib/vmd/shaders"; \
> > fi;
> > cp ../data/.vmdrc ../data/.vmdsensors ../data/vmd_completion.dat
> > "/usr/local/lib/vmd"
> > cd ../bin ; \
> > if [ -f run_vmd_tmp ]; then rm -f run_vmd_tmp; fi ; \
> > if [ ! -x "/bin/csh" ]; then \
> > A A A echo "Info: /bin/csh shell not found, installing Bourne shell
> > startup script instead" ; \
> > A A A echo '#!/bin/sh' >> run_vmd_tmp ; \
> > A A A echo 'defaultvmddir="/usr/local/lib/vmd"' >> run_vmd_tmp ; \
> > A A A echo 'vmdbasename=vmd' >> run_vmd_tmp ; \
> > A A A cat vmd.sh >> run_vmd_tmp ; \
> > else \
> > A A A echo '#!/bin/csh' >> run_vmd_tmp ; \
> > A A A echo 'set defaultvmddir="/usr/local/lib/vmd"' >> run_vmd_tmp
> ; \
> > A A A echo 'set vmdbasename=vmd' >> run_vmd_tmp ; \
> > A A A cat vmd.csh >> run_vmd_tmp ; \
> > fi ; \
> > chmod +x run_vmd_tmp ; \
> > cp run_vmd_tmp "/usr/local/bin"/vmd ; \
> > rm -f run_vmd_tmp
> > echo Make sure "/usr/local/bin"/vmd is in your path.
> > Make sure /usr/local/bin/vmd is in your path.
> > echo "VMD installation complete.A Enjoy!"
> > VMD installation complete.A Enjoy!
> > [root_at_localhost src]# vmd
> > /usr/local/lib/vmd/vmd_LINUX: Command not found.
> >
> > Regards,
> >
> > Archana
> > On Wed, Nov 23, 2016 at 1:14 PM, John Stone <[1]johns_at_ks.uiuc.edu>
> wrote:
> >
> > Hi,
> > A Does your CentOS 7 machine have 32-bit runtime libraries on
> it?A If
> > not,
> > you will have to install a 64-bit build instead of a 32-bit build.
> > That could cause the error you're seeing.A You can double-check
> whether
> > that's a likely scenario by checking that
> /usr/local/lib/vmd/vmd_LINUX
> > does indeed exist.A If it does, then most likely your machine lacks
> > 32-bit
> > libraries and you'd need to install one of the 64-bit builds instead
> > (LINUXAMD64).
> >
> > Cheers,
> > A John Stone
> > A [2]vmd_at_ks.uiuc.edu
> > On Wed, Nov 23, 2016 at 01:04:45PM +0530, Archana Sonawani-Jagtap
> wrote:
> > >A A Hi all,
> > >A A I am trying toA installA vmd-1.9.2 on Centos7 platform. I
> have
> > downloaded
> > >A A theA vmd-1.9.2.bin.LINUX.opengl.tar.gz file.
> > >A A I want to install it in /usr/local, so I followed the
> following
> > steps:
> > >
> > >A A 1) I untar it in /usr/local.
> > >A A 2) cd vmd-1.9.2A
> > >A A 3) ./configure
> > >A A 4) cd src
> > >A A 5) make install
> > >
> > >A A I get following message:
> > >A A Make sure /usr/local/bin/vmd is in your path.
> > >A A VMD installation complete.AA Enjoy!
> > >A A And when I run vmd from /usr/local/bin, I get following
> error:
> > >A A /usr/local/lib/vmd/vmd_LINUX: Command not found
> > >
> > >A A Please help me out
> > >A A Regards,
> > >A A Archana Sonawani-Jagtap
> > >A A S9960791339
> >
> > --
> > NIH Center for Macromolecular Modeling and Bioinformatics
> > Beckman Institute for Advanced Science and Technology
> > University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> > [3]http://www.ks.uiuc.edu/~johns/A A A A A A Phone:
> 217-244-3349
> > [4]http://www.ks.uiuc.edu/Research/vmd/
> >
> > --
> > Archana Sonawani-Jagtap
> > Senior Research Fellow,
> > Biomedical Informatics Centre,
> > NIRRH (ICMR), Parel
> > Mumbai, India.
> > 9960791339
> >
> > References
> >
> > Visible links
> > 1. mailto:johns_at_ks.uiuc.edu
> > 2. mailto:vmd_at_ks.uiuc.edu
> > 3. http://www.ks.uiuc.edu/~johns/
> > 4. http://www.ks.uiuc.edu/Research/vmd/
>
> --
> NIH Center for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349
> http://www.ks.uiuc.edu/Research/vmd/
> 

-- 
Archana Sonawani-Jagtap
Senior Research Fellow,
Biomedical Informatics Centre,
NIRRH (ICMR), Parel
Mumbai, India.
9960791339