VMD-L Mailing List

From: Amir Hajiahmadi Farmahini (afa047_at_uib.no)
Date: Sat May 22 2010 - 09:19:18 CDT

Hi,

How can I figure out following problem to be able to generate RDF.
I need underlying selection as my first selection in VMD to generate RDF:

Two or more atoms at them same time have to be selected from "same
molecule" in "one selection". To bring a very simple example: both
Oxygen atoms from same molecule of carbon dioxide have to be selected as
the first selection in RDF to be within a specific distance from Second
selection.
Second selection can be any atom from another molecules (Not important
here).

The problem is I was not able to ensure selected atoms are at the same
time from same molecule.

Regards,
Amir Farmahini