VMD-L Mailing List
From: John Stone (johns_at_ks.uiuc.edu)
Date: Fri Apr 16 2010 - 16:42:22 CDT
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Hi,
I'm out of town for another day, so I'm behind on emails.
Have you tried coloring by "element"? (or are you loading from
file formats that don't specify atomic element?)
Cheers,
John
On Fri, Apr 16, 2010 at 02:15:07PM +0100, Jennifer Williams wrote:
>
>
> Hi,
>
> I have a structure and need to change the colours of certain atoms. In
> my .pdb file I have SI and S. Both are automatically recognized as S
> in VMD and given the same colour. I am unable to change this using the
> colour control in the graphical interface.
>
> I know that I could easily do find and replace in my .pdb file but I
> also have trajectory files which I cannot format.
>
> Is there someone around this -perhaps using some script command. Any
> help greatly appreciated,
>
> Jenny
>
>
>
> --
> The University of Edinburgh is a charitable body, registered in
> Scotland, with registration number SC005336.
>
-- NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801 Email: johns_at_ks.uiuc.edu Phone: 217-244-3349 WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
- Next message: John Stone: "Re: mol urlload -- this doesn't seem to work in Windows (it does seem to work from Linux)"
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- In reply to: Jennifer Williams: "Colouring atoms named with the same first letter"
- Next in thread: Jennifer Williams: "Re: Colouring atoms named with the same first letter"
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