VMD-L Mailing List
From: Fatemesadat Emami (fe2_at_zips.uakron.edu)
Date: Fri Sep 10 2010 - 14:37:23 CDT
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Dear vmd users,
I want to load some peptides into vmd in a way that each amino acid has its
own color. To do that I added "mol default color resname" to .vmd.rc file.
Now how can I define the colors for each amino acid (e.g. I want lys to be
red, arg to be tan etc, or res1 to be red, res2 to be tan and ...). I mean I
want to change the color sequence asign to amino acids in the molecule.
acually I could do that (e.g. for LYS) by"
mol color colorID 5
mol selection {resname ARG}
mol addrep top
mol color colorID 1
mol selection {resname LYS}
mol addrep top
mol color colorID 3
mol selection {resname LEU}
mol addrep top
mol color colorID 11
mol selection {resname PRO}
mol addrep top
and ...
BUT when I render the image by Tachyon, it shows the default colors!!! as if
I haven't done anythig.
I wonder if somebody can help me on that.
Thank you very much
Fatima
-- Yours Sincerely, Fateme Sadat Emami Nano Scale Laboratory Polymer Engineering Department The University of Akron
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