VMD-L Mailing List

From: ban arn (ban.arn_at_gmail.com)
Date: Tue Aug 30 2011 - 12:14:35 CDT

Dear VMD user

I would like to display water within 3 of ligand.

I'm using command as " waters within 3 of resname UNK".

It shows only hydrogens for some of the water molecules instead of full
molecule.

How to dispaly the full molecule if its selected within 3 A.

I would also like to know the command for how to undisplay the non-polar
hydrogens in VMD.

Many Thanks
Balaji