VMD-L Mailing List

From: Robert Brunner (rbrunner_at_illinois.edu)
Date: Mon Apr 26 2010 - 19:12:07 CDT

Well, that error message doesn't appear in the source of the MergeStructures plugin. I suspect it is coming from psfgen, which is the code that actually processes the PSF files. VMD mostly doesn't really care about the angle section of the PSF file, but psfgen does, so perhaps look at the angle section of your psf file and see if anything about the formatting or number of elements looks off. I suppose you might just be running out of memory too. Check how much memory VMD requires to load your files, and maybe watch the process memory while running MergeStructs and see if it its using a lot.

Robert

On Apr 26, 2010, at 6:57 PM, muniyamuthu.raviprasad_at_ndsu.edu wrote:

> Hi
>
> I do not get any errors when I load the files individually, but
> If I try to merge those two files using merge plug in, I am getting errors
> ( Error processing angles)
>
> Thanks
>
>
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>> Its not clear what the issue could be. Do you get any errors when you load
>> each structure individually into VMD?
>>
>>
>>
>> On Apr 23, 2010, at 5:36 PM, muniyamuthu.raviprasad_at_ndsu.edu wrote:
>>
>>> Hi VMDers
>>>
>>> I am trying to merge two pdb files and psf files into single file. I
>>> tried
>>> Merge Structures plug in in VMD.
>>>
>>> I am getting this "error processing angles"
>>>
>>> Any idea to solve this problem ?
>>>
>>> Thanks
>>> Ravi
>>>
>>
>>
>>
>
>