VMD-L Mailing List

From: Gulce Kalyoncu (gkalyonc_at_email.uark.edu)
Date: Tue May 29 2018 - 20:42:15 CDT

 Hello Everyone,

I would like to remove rotational degrees of freedom of three particles in
vmd by using trajectory tool. However, the system that I am working on has
periodic boundaries and after alignment I have some points with coordinates
which are out of my imaginary box. Does anyone know a proper way to remove
the rotational degrees of freedom for such a system? I appreciate any help
that you can provide.

Best Regards,
Gulce Kalyoncu