VMD-L Mailing List
From: John Stone (johns_at_ks.uiuc.edu)
Date: Mon Mar 22 2004 - 10:16:37 CST
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- In reply to: Saladino, Alex: "HOLE output visualization"
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Alex,
Did you see the previous response to your question by Oliver Beckstein?:
http://www.ks.uiuc.edu/Research/vmd/mailing_list/vmd-l/2536.html
Have you tried using those two programs sph_process and sos_triangle?
You could also load the "Plot" files that it can produce into VMD using
the "Plt" plugin I believe. (produced by sphqpt etc)
http://www.biochemistry.bham.ac.uk/osmart/hole/doc/hole_d09.html
One could write a simple VMD script to generate spheres according to
the positions calculated by HOLE with a little work. I know that people
in our group have done this sort of thing in the past, but I don't have a
copy of their scripts presently.
John Stone
vmd_at_ks.uiuc.edu
On Tue, Mar 16, 2004 at 05:35:12PM -0500, Saladino, Alex wrote:
> Hello VMDers,
> I was wondering if anyone had a script or knew of a way to visualize the
> output from the program HOLE with VMD.
>
> Thanks,
> Alex
-- NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801 Email: johns_at_ks.uiuc.edu Phone: 217-244-3349 WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
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- In reply to: Saladino, Alex: "HOLE output visualization"
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