VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Wed Aug 22 2012 - 10:12:30 CDT

Vlad,
  I've never seen that error before. I've been compiling VMD with
CUDA 4.0 and with the latest CUDA 5.0 release candidate, but I
haven't ever tried with version 4.2.9. Can you email me the output
you get from:
  uname -a
  gcc --version
  g++ --version
  nvcc --version

Cheers,
  John

On Wed, Aug 22, 2012 at 04:49:16PM +0200, Vlad Cojocaru wrote:
> Thanks John,
>
> I read through the VMD CVS documentation and I realized that this a new
> plugin .. I retrieved it and not the plugins built properly.
> However, I have another problem, which seems to be related to CUDA. When
> I build VMD, I get the error below. I am using cuda 4.2.9.
>
> Best,
> Vlad
>
> tmpxft_00000c64_00000000-6_CUDAQuickSurf.compute_20.cudafe1.cpp:(.text+0x2820):
> undefined reference to `CUDAMarchingCubes::~CUDAMarchingCubes()'
> tmpxft_00000c64_00000000-6_CUDAQuickSurf.compute_20.cudafe1.cpp:(.text+0x283d):
> undefined reference to `CUDAMarchingCubes::CUDAMarchingCubes()'
> tmpxft_00000c64_00000000-6_CUDAQuickSurf.compute_20.cudafe1.cpp:(.text+0x2858):
> undefined reference to `CUDAMarchingCubes::Initialize(uint3)'
> tmpxft_00000c64_00000000-6_CUDAQuickSurf.compute_20.cudafe1.cpp:(.text+0x2cc4):
> undefined reference to `CUDAMarchingCubes::SetVolumeData(float*, float*,
> uint3, float3, float3, bool)'
> tmpxft_00000c64_00000000-6_CUDAQuickSurf.compute_20.cudafe1.cpp:(.text+0x2d6d):
> undefined reference to `CUDAMarchingCubes::SetSubVolume(uint3, uint3)'
> tmpxft_00000c64_00000000-6_CUDAQuickSurf.compute_20.cudafe1.cpp:(.text+0x2d8d):
> undefined reference to `CUDAMarchingCubes::computeIsosurface(float3*,
> float3*, float3*, unsigned int)'
> tmpxft_00000c64_00000000-6_CUDAQuickSurf.compute_20.cudafe1.cpp:(.text+0x2e01):
> undefined reference to `DispCmdTriMesh::cuda_putdata(float const*, float
> const*, float const*, int, VMDDisplayList*)'
> tmpxft_00000c64_00000000-6_CUDAQuickSurf.compute_20.cudafe1.cpp:(.text+0x30de):
> undefined reference to `DispCmdTriMesh::cuda_putdata(float const*, float
> const*, float const*, int, VMDDisplayList*)'
> tmpxft_00000c64_00000000-6_CUDAQuickSurf.compute_20.cudafe1.cpp:(.text+0x33af):
> undefined reference to `CUDAMarchingCubes::CUDAMarchingCubes()'
> tmpxft_00000c64_00000000-6_CUDAQuickSurf.compute_20.cudafe1.cpp:(.text+0x33ca):
> undefined reference to `CUDAMarchingCubes::Initialize(uint3)'
> collect2: ld returned 1 exit status
> make: *** [vmd_LINUXAMD64] Error 1
>
> On 08/22/2012 04:34 PM, John Stone wrote:
> >Vlad,
> > Please try doing a "cvs update -PAd" in the top level plugins directory
> >to make sure you get the new vmdprefs plugin. That should solve the error
> >you got below.
> >
> >Cheers,
> > John Stone
> > vmd_at_ks.uiuc.edu
> >
> >On Wed, Aug 22, 2012 at 11:41:21AM +0200, Vlad Cojocaru wrote:
> >>Thanks John,
> >>
> >>I updated the CVS but now I get other missing directory error (see below):
> >>
> >>Best,
> >>Vlad
> >>
> >>Copying volutil 1.3 files to
> >>Copying vmddebug 1.0 files to
> >>/usr/local/apps/vmd/2012-08-21-SRC/lib/plugins/noarch/tcl/vmddebug1.0
> >>Copying vmdmovie 1.9 files to
> >>/usr/local/apps/vmd/2012-08-21-SRC/lib/plugins/noarch/tcl/vmdmovie1.9
> >>/bin/sh: line 0: cd: vmdprefs: No such file or directory
> >>make: *** [distrib] Error 1
> >>
> >>On 08/21/2012 06:06 PM, Vlad Cojocaru wrote:
> >>>Dear all,
> >>>
> >>>I am trying to compile the vmd cvs code downloaded today and while
> >>>building the plugins, I get the error below (build script also
> >>>provided below).
> >>>It looks as if some gif files are missing .... Does anybody know how
> >>>to fix this ?
> >>>
> >>>Thanks
> >>>Vlad
> >>>
> >>>----------------script used to build plugins ----------------
> >>>#!/bin/bash
> >>>
> >>>export TCLINC="-I/usr/include"
> >>>export TCLLIB="-L/usr/lib64"
> >>>
> >>>export NETCDFINC="-I/usr/include"
> >>>export NETCDFLIB="-I/usr/lib64"
> >>>
> >>>make clean
> >>>make LINUXAMD64 TCLINC=$TCLINC TCLLIB=$TCLLIB NETCDFINC=$NETCDFINC
> >>>NETCDFLIB=$NETCDFLIB 2>&1 | tee make.log
> >>>export PLUGINDIR="/usr/local/apps/vmd/2012-08-21-SRC/lib/plugins"
> >>>make distrib 2>&1 | tee make_distrib.log
> >>>
> >>>exit
> >>>
> >>>-----------------error--------------------
> >>>Copying molfile plugins to
> >>>/usr/local/apps/vmd/2012-08-21-SRC/lib/plugins destination area
> >>> abinitplugin.so ...
> >>> biomoccaplugin.so ...
> >>> cpmdplugin.so ...
> >>> psfplugin.so ...
> >>> pdbplugin.so ...
> >>> dcdplugin.so ...
> >>> babelplugin.so ...
> >>> gromacsplugin.so ...
> >>> parmplugin.so ...
> >>> crdplugin.so ...
> >>> namdbinplugin.so ...
> >>> binposplugin.so ...
> >>> graspplugin.so ...
> >>> msmsplugin.so ...
> >>> stlplugin.so ...
> >>> offplugin.so ...
> >>> cubeplugin.so ...
> >>> edmplugin.so ...
> >>> ccp4plugin.so ...
> >>> dsn6plugin.so ...
> >>> brixplugin.so ...
> >>> pltplugin.so ...
> >>> raster3dplugin.so ...
> >>> parm7plugin.so ...
> >>> rst7plugin.so ...
> >>> tinkerplugin.so ...
> >>> uhbdplugin.so ...
> >>> vaspchgcarplugin.so ...
> >>> vaspparchgplugin.so ...
> >>> vaspposcarplugin.so ...
> >>> vaspoutcarplugin.so ...
> >>> vaspxdatcarplugin.so ...
> >>> vaspxmlplugin.so ...
> >>> dlpolyplugin.so ...
> >>> lammpsplugin.so ...
> >>> vtfplugin.so ...
> >>> xyzplugin.so ...
> >>> corplugin.so ...
> >>> moldenplugin.so ...
> >>> phiplugin.so ...
> >>> pbeqplugin.so ...
> >>> grdplugin.so ...
> >>> situsplugin.so ...
> >>> dxplugin.so ...
> >>> spiderplugin.so ...
> >>> mapplugin.so ...
> >>> avsplugin.so ...
> >>> fs4plugin.so ...
> >>> pqrplugin.so ...
> >>> mol2plugin.so ...
> >>> gridplugin.so ...
> >>> carplugin.so ...
> >>> mdfplugin.so ...
> >>> gamessplugin.so ...
> >>> xsfplugin.so ...
> >>> bgfplugin.so ...
> >>> xbgfplugin.so ...
> >>> jsplugin.so ...
> >>> dtrplugin.so ...
> >>> maeffplugin.so ...
> >>> basissetplugin.so ...
> >>> webpdbplugin.so ...
> >>> netcdfplugin.so ...
> >>> hoomdplugin.so ...
> >>> dmsplugin.so ...
> >>> libmolfile_plugin.a ...
> >>> libmolfile_plugin.h ...
> >>> libmolfile_plugin.lib ...
> >>> libmolfile_plugin.h ...
> >>>Copying apbsrun 1.3 files to
> >>>/usr/local/apps/vmd/2012-08-21-SRC/lib/plugins/noarch/tcl/apbsrun1.3
> >>>Copying atomedit 1.0 files to
> >>>/usr/local/apps/vmd/2012-08-21-SRC/lib/plugins/noarch/tcl/atomedit1.0
> >>>This is pdfTeX, Version 3.1415926-2.3-1.40.12 (TeX Live 2011)
> >>>restricted \write18 enabled.
> >>>entering extended mode
> >>>(./ug.tex
> >>>LaTeX2e <2009/09/24>
> >>>Babel <v3.8l> and hyphenation patterns for english, dumylang,
> >>>nohyphenation, ge
> >>>rman-x-2009-06-19, ngerman-x-2009-06-19, afrikaans, ancientgreek,
> >>>ibycus, arabi
> >>>c, armenian, basque, bulgarian, catalan, pinyin, coptic, croatian,
> >>>czech, danis
> >>>h, dutch, ukenglish, usenglishmax, esperanto, estonian, ethiopic,
> >>>farsi, finnis
> >>>h, french, galician, german, ngerman, swissgerman, monogreek, greek,
> >>>hungarian,
> >>>icelandic, assamese, bengali, gujarati, hindi, kannada, malayalam,
> >>>marathi, or
> >>>iya, panjabi, tamil, telugu, indonesian, interlingua, irish, italian,
> >>>kurmanji,
> >>>lao, latin, latvian, lithuanian, mongolian, mongolianlmc, bokmal,
> >>>nynorsk, pol
> >>>ish, portuguese, romanian, russian, sanskrit, serbian, serbianc,
> >>>slovak, sloven
> >>>ian, spanish, swedish, turkish, turkmen, ukrainian, uppersorbian,
> >>>welsh, loaded
> >>>.
> >>>(/usr/share/texmf/tex/latex/base/article.cls
> >>>Document Class: article 2007/10/19 v1.4h Standard LaTeX document class
> >>>(/usr/share/texmf/tex/latex/base/size10.clo))
> >>>(/usr/share/texmf/tex/latex/graphics/graphicx.sty
> >>>(/usr/share/texmf/tex/latex/graphics/keyval.sty)
> >>>(/usr/share/texmf/tex/latex/graphics/graphics.sty
> >>>(/usr/share/texmf/tex/latex/graphics/trig.sty)
> >>>(/usr/share/texmf/tex/latex/latexconfig/graphics.cfg)
> >>>(/usr/share/texmf/tex/latex/pdftex-def/pdftex.def
> >>>(/usr/share/texmf/tex/generic/oberdiek/infwarerr.sty)
> >>>(/usr/share/texmf/tex/generic/oberdiek/ltxcmds.sty))))
> >>>(/usr/lib/texmf/tex/latex/html/html.sty
> >>>(/usr/share/texmf/tex/latex/hyperref/hyperref.sty
> >>>(/usr/share/texmf/tex/generic/oberdiek/hobsub-hyperref.sty
> >>>(/usr/share/texmf/tex/generic/oberdiek/hobsub-generic.sty))
> >>>(/usr/share/texmf/tex/generic/ifxetex/ifxetex.sty)
> >>>(/usr/share/texmf/tex/latex/oberdiek/kvoptions.sty)
> >>>(/usr/share/texmf/tex/latex/hyperref/pd1enc.def)
> >>>(/usr/share/texmf/tex/latex/latexconfig/hyperref.cfg)
> >>>(/usr/share/texmf/tex/latex/url/url.sty))
> >>>
> >>>Package hyperref Message: Driver (autodetected): hpdftex.
> >>>
> >>>(/usr/share/texmf/tex/latex/hyperref/hpdftex.def
> >>>(/usr/share/texmf/tex/latex/oberdiek/rerunfilecheck.sty)))
> >>>(./ug_macros.tex)
> >>>No file ug.aux.
> >>>(/usr/share/texmf/tex/context/base/supp-pdf.mkii
> >>>[Loading MPS to PDF converter (version 2006.09.02).]
> >>>) (/usr/share/texmf/tex/latex/oberdiek/epstopdf-base.sty
> >>>(/usr/share/texmf/tex/latex/oberdiek/grfext.sty)
> >>>(/usr/share/texmf/tex/latex/latexconfig/epstopdf-sys.cfg))
> >>>(/usr/share/texmf/tex/latex/hyperref/nameref.sty
> >>>(/usr/share/texmf/tex/generic/oberdiek/gettitlestring.sty))
> >>>(./ug_title.tex)
> >>>[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./ug_text.tex
> >>>Underfull \hbox (badness 10000) in paragraph at lines 10--11
> >>>
> >>>(/usr/share/texmf/tex/latex/base/omscmr.fd)
> >>><autoimd-diagram.pdf, id=19, 301.125pt x 288.07625pt>
> >>><use autoimd-diagram.pdf>
> >>>
> >>>LaTeX Warning: Reference `fig:autoimd-diagram' on page 3 undefined on
> >>>input lin
> >>>e 31.
> >>>
> >>>[3 <./autoimd-diagram.pdf>]
> >>>
> >>>LaTeX Warning: Reference `par:customize' on page 4 undefined on input
> >>>line 58.
> >>>
> >>>
> >>>LaTeX Warning: Reference `fig:autoimd-GUI' on page 4 undefined on
> >>>input line 78
> >>>.
> >>>
> >>>
> >>>Underfull \hbox (badness 10000) in paragraph at lines 78--79
> >>>
> >>><autoimd-GUI.pdf, id=45, 431.6125pt x 298.11375pt> <use autoimd-GUI.pdf>
> >>>
> >>>LaTeX Warning: Reference `fig:simsettings-GUI' on page 4 undefined on
> >>>input lin
> >>>e 85.
> >>>
> >>>
> >>>Underfull \hbox (badness 10000) in paragraph at lines 85--86
> >>>
> >>><simsettings-GUI.pdf, id=46, 543.02875pt x 443.6575pt>
> >>><use simsettings-GUI.pdf>
> >>>Underfull \hbox (badness 10000) in paragraph at lines 91--92
> >>>
> >>>
> >>>Underfull \hbox (badness 10000) in paragraph at lines 96--97
> >>>
> >>>[4 <./autoimd-GUI.pdf>]
> >>>Underfull \hbox (badness 10000) in paragraph at lines 100--101
> >>>
> >>>
> >>>Underfull \hbox (badness 10000) in paragraph at lines 104--105
> >>>
> >>>
> >>>Underfull \hbox (badness 10000) in paragraph at lines 106--107
> >>>
> >>>
> >>>Underfull \hbox (badness 10000) in paragraph at lines 111--112
> >>>
> >>>
> >>>Underfull \hbox (badness 10000) in paragraph at lines 115--116
> >>>
> >>>
> >>>Underfull \hbox (badness 10000) in paragraph at lines 118--119
> >>>
> >>>
> >>>Underfull \hbox (badness 10000) in paragraph at lines 125--126
> >>>
> >>>[5 <./simsettings-GUI.pdf>]
> >>>Underfull \hbox (badness 10000) in paragraph at lines 130--131
> >>>
> >>>
> >>>Underfull \hbox (badness 10000) in paragraph at lines 134--135
> >>>
> >>>
> >>>Underfull \hbox (badness 10000) in paragraph at lines 140--141
> >>>
> >>>
> >>>Underfull \hbox (badness 10000) in paragraph at lines 170--171
> >>>
> >>>[6]
> >>>Underfull \hbox (badness 10000) in paragraph at lines 194--195
> >>>
> >>>
> >>>Underfull \hbox (badness 10000) in paragraph at lines 207--208
> >>>
> >>>[7]
> >>>Underfull \hbox (badness 10000) in paragraph at lines 254--255
> >>>
> >>>) [8] (./ug.aux)
> >>>
> >>>Package rerunfilecheck Warning: File `ug.out' has changed.
> >>>(rerunfilecheck) Rerun to get outlines right
> >>>(rerunfilecheck) or use package `bookmark'.
> >>>
> >>>
> >>>LaTeX Warning: There were undefined references.
> >>>
> >>>
> >>>LaTeX Warning: Label(s) may have changed. Rerun to get
> >>>cross-references right.
> >>>
> >>>)
> >>>(see the transcript file for additional
> >>>information)</usr/share/texmf/fonts/typ
> >>>e1/public/amsfonts/cm/cmbx10.pfb></usr/share/texmf/fonts/type1/public/amsfonts/
> >>>
> >>>cm/cmbx12.pfb></usr/share/texmf/fonts/type1/public/amsfonts/cm/cmbx8.pfb></usr/
> >>>
> >>>share/texmf/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texmf/fonts/ty
> >>>
> >>>pe1/public/amsfonts/cm/cmr12.pfb></usr/share/texmf/fonts/type1/public/amsfonts/
> >>>
> >>>cm/cmr17.pfb></usr/share/texmf/fonts/type1/public/amsfonts/cm/cmr6.pfb></usr/sh
> >>>
> >>>are/texmf/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texmf/fonts/type1
> >>>
> >>>/public/amsfonts/cm/cmr8.pfb></usr/share/texmf/fonts/type1/public/amsfonts/cm/c
> >>>
> >>>msl8.pfb></usr/share/texmf/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/shar
> >>>
> >>>e/texmf/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texmf/fonts/type1
> >>>
> >>>/public/amsfonts/cm/cmtt10.pfb>
> >>>Output written on ug.pdf (8 pages, 319257 bytes).
> >>>Transcript written on ug.log.
> >>>This is pdfTeX, Version 3.1415926-2.3-1.40.12 (TeX Live 2011)
> >>>restricted \write18 enabled.
> >>>entering extended mode
> >>>(./ug.tex
> >>>LaTeX2e <2009/09/24>
> >>>Babel <v3.8l> and hyphenation patterns for english, dumylang,
> >>>nohyphenation, ge
> >>>rman-x-2009-06-19, ngerman-x-2009-06-19, afrikaans, ancientgreek,
> >>>ibycus, arabi
> >>>c, armenian, basque, bulgarian, catalan, pinyin, coptic, croatian,
> >>>czech, danis
> >>>h, dutch, ukenglish, usenglishmax, esperanto, estonian, ethiopic,
> >>>farsi, finnis
> >>>h, french, galician, german, ngerman, swissgerman, monogreek, greek,
> >>>hungarian,
> >>>icelandic, assamese, bengali, gujarati, hindi, kannada, malayalam,
> >>>marathi, or
> >>>iya, panjabi, tamil, telugu, indonesian, interlingua, irish, italian,
> >>>kurmanji,
> >>>lao, latin, latvian, lithuanian, mongolian, mongolianlmc, bokmal,
> >>>nynorsk, pol
> >>>ish, portuguese, romanian, russian, sanskrit, serbian, serbianc,
> >>>slovak, sloven
> >>>ian, spanish, swedish, turkish, turkmen, ukrainian, uppersorbian,
> >>>welsh, loaded
> >>>.
> >>>(/usr/share/texmf/tex/latex/base/article.cls
> >>>Document Class: article 2007/10/19 v1.4h Standard LaTeX document class
> >>>(/usr/share/texmf/tex/latex/base/size10.clo))
> >>>(/usr/share/texmf/tex/latex/graphics/graphicx.sty
> >>>(/usr/share/texmf/tex/latex/graphics/keyval.sty)
> >>>(/usr/share/texmf/tex/latex/graphics/graphics.sty
> >>>(/usr/share/texmf/tex/latex/graphics/trig.sty)
> >>>(/usr/share/texmf/tex/latex/latexconfig/graphics.cfg)
> >>>(/usr/share/texmf/tex/latex/pdftex-def/pdftex.def
> >>>(/usr/share/texmf/tex/generic/oberdiek/infwarerr.sty)
> >>>(/usr/share/texmf/tex/generic/oberdiek/ltxcmds.sty))))
> >>>(/usr/lib/texmf/tex/latex/html/html.sty
> >>>(/usr/share/texmf/tex/latex/hyperref/hyperref.sty
> >>>(/usr/share/texmf/tex/generic/oberdiek/hobsub-hyperref.sty
> >>>(/usr/share/texmf/tex/generic/oberdiek/hobsub-generic.sty))
> >>>(/usr/share/texmf/tex/generic/ifxetex/ifxetex.sty)
> >>>(/usr/share/texmf/tex/latex/oberdiek/kvoptions.sty)
> >>>(/usr/share/texmf/tex/latex/hyperref/pd1enc.def)
> >>>(/usr/share/texmf/tex/latex/latexconfig/hyperref.cfg)
> >>>(/usr/share/texmf/tex/latex/url/url.sty))
> >>>
> >>>Package hyperref Message: Driver (autodetected): hpdftex.
> >>>
> >>>(/usr/share/texmf/tex/latex/hyperref/hpdftex.def
> >>>(/usr/share/texmf/tex/latex/oberdiek/rerunfilecheck.sty)))
> >>>(./ug_macros.tex)
> >>>(./ug.aux) (/usr/share/texmf/tex/context/base/supp-pdf.mkii
> >>>[Loading MPS to PDF converter (version 2006.09.02).]
> >>>) (/usr/share/texmf/tex/latex/oberdiek/epstopdf-base.sty
> >>>(/usr/share/texmf/tex/latex/oberdiek/grfext.sty)
> >>>(/usr/share/texmf/tex/latex/latexconfig/epstopdf-sys.cfg))
> >>>(/usr/share/texmf/tex/latex/hyperref/nameref.sty
> >>>(/usr/share/texmf/tex/generic/oberdiek/gettitlestring.sty)) (./ug.out)
> >>>(./ug.out) (./ug_title.tex)
> >>>[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.ma
> >>>p}] (./ug.toc) [2] (./ug_text.tex
> >>>Underfull \hbox (badness 10000) in paragraph at lines 10--11
> >>>
> >>>(/usr/share/texmf/tex/latex/base/omscmr.fd)
> >>><autoimd-diagram.pdf, id=55, 301.125pt x 288.07625pt>
> >>><use autoimd-diagram.pdf> [3 <./autoimd-diagram.pdf>]
> >>>Underfull \hbox (badness 10000) in paragraph at lines 78--79
> >>>
> >>><autoimd-GUI.pdf, id=82, 431.6125pt x 298.11375pt> <use autoimd-GUI.pdf>
> >>>Underfull \hbox (badness 10000) in paragraph at lines 85--86
> >>>
> >>><simsettings-GUI.pdf, id=84, 543.02875pt x 443.6575pt>
> >>><use simsettings-GUI.pdf>
> >>>Underfull \hbox (badness 10000) in paragraph at lines 91--92
> >>>
> >>>
> >>>Underfull \hbox (badness 10000) in paragraph at lines 96--97
> >>>
> >>>[4 <./autoimd-GUI.pdf>]
> >>>Underfull \hbox (badness 10000) in paragraph at lines 100--101
> >>>
> >>>
> >>>Underfull \hbox (badness 10000) in paragraph at lines 104--105
> >>>
> >>>
> >>>Underfull \hbox (badness 10000) in paragraph at lines 106--107
> >>>
> >>>
> >>>Underfull \hbox (badness 10000) in paragraph at lines 111--112
> >>>
> >>>
> >>>Underfull \hbox (badness 10000) in paragraph at lines 115--116
> >>>
> >>>
> >>>Underfull \hbox (badness 10000) in paragraph at lines 118--119
> >>>
> >>>
> >>>Underfull \hbox (badness 10000) in paragraph at lines 125--126
> >>>
> >>>[5 <./simsettings-GUI.pdf>]
> >>>Underfull \hbox (badness 10000) in paragraph at lines 130--131
> >>>
> >>>
> >>>Underfull \hbox (badness 10000) in paragraph at lines 134--135
> >>>
> >>>
> >>>Underfull \hbox (badness 10000) in paragraph at lines 140--141
> >>>
> >>>
> >>>Underfull \hbox (badness 10000) in paragraph at lines 170--171
> >>>
> >>>[6]
> >>>Underfull \hbox (badness 10000) in paragraph at lines 194--195
> >>>
> >>>
> >>>Underfull \hbox (badness 10000) in paragraph at lines 207--208
> >>>
> >>>[7]
> >>>Underfull \hbox (badness 10000) in paragraph at lines 254--255
> >>>
> >>>) [8] (./ug.aux) )
> >>>(see the transcript file for additional
> >>>information)</usr/share/texmf/fonts/typ
> >>>e1/public/amsfonts/cm/cmbx10.pfb></usr/share/texmf/fonts/type1/public/amsfonts/
> >>>
> >>>cm/cmbx12.pfb></usr/share/texmf/fonts/type1/public/amsfonts/cm/cmbx8.pfb></usr/
> >>>
> >>>share/texmf/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texmf/fonts/ty
> >>>
> >>>pe1/public/amsfonts/cm/cmr12.pfb></usr/share/texmf/fonts/type1/public/amsfonts/
> >>>
> >>>cm/cmr17.pfb></usr/share/texmf/fonts/type1/public/amsfonts/cm/cmr6.pfb></usr/sh
> >>>
> >>>are/texmf/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texmf/fonts/type1
> >>>
> >>>/public/amsfonts/cm/cmr8.pfb></usr/share/texmf/fonts/type1/public/amsfonts/cm/c
> >>>
> >>>msl8.pfb></usr/share/texmf/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/shar
> >>>
> >>>e/texmf/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texmf/fonts/type1
> >>>
> >>>/public/amsfonts/cm/cmtt10.pfb>
> >>>Output written on ug.pdf (8 pages, 322174 bytes).
> >>>Transcript written on ug.log.
> >>>Copying autoimd 1.7 files to
> >>>/usr/local/apps/vmd/2012-08-21-SRC/lib/plugins/noarch/tcl/autoimd1.7
> >>>Copying autoionize 1.3 files to
> >>>/usr/local/apps/vmd/2012-08-21-SRC/lib/plugins/noarch/tcl/autoionize1.3
> >>>Copying bendix 1.0 files to
> >>>/usr/local/apps/vmd/2012-08-21-SRC/lib/plugins/noarch/tcl/bendix1.0
> >>>cp: cannot stat `doc/GUI-tips.gif': No such file or directory
> >>>cp: cannot stat `doc/Monsieur_Bendix_smaller_still.gif': No such file
> >>>or directory
> >>>make[1]: *** [distrib] Error 1
> >>>make: *** [distrib] Error 1
> >>>
> >>--
> >>Dr. Vlad Cojocaru
> >>Max Planck Institute for Molecular Biomedicine
> >>Department of Cell and Developmental Biology
> >>Röntgenstrasse 20, 48149 Münster, Germany
> >>Tel: +49-251-70365-324; Fax: +49-251-70365-399
> >>Email: vlad.cojocaru[at]mpi-muenster.mpg.de
> >>http://www.mpi-muenster.mpg.de/research/teams/groups/rgcojocaru
> >>
> >>
>
> --
> Dr. Vlad Cojocaru
> Max Planck Institute for Molecular Biomedicine
> Department of Cell and Developmental Biology
> Röntgenstrasse 20, 48149 Münster, Germany
> Tel: +49-251-70365-324; Fax: +49-251-70365-399
> Email: vlad.cojocaru[at]mpi-muenster.mpg.de
> http://www.mpi-muenster.mpg.de/research/teams/groups/rgcojocaru
>
> 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
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http://www.ks.uiuc.edu/Research/vmd/       Fax: 217-244-6078