VMD-L Mailing List

From: bo baker (bo.bybaker_at_gmail.com)
Date: Thu Aug 30 2007 - 22:44:57 CDT

Hello, VMD:

I try to merge my protein with membrane using VMD. Here is how I did:

load meambrane files (psf and pdb)
load protein files (psf and pdb)

Fix membrane
move and rotate protein to the position where I wanted (top of the membrane)
save protein coordinate in another PDB file (with selecting "all")

The new PDB file moves to a paralled (compared with the original one)
new position, but not the position where I aligned it with the
membrane. I tried several times. The new PDBs are in new positions but
paralled to the original one, not on the top of the membrane.

I don't know if I did something wrong.

I tried on VMD 1.8.2 and VMD 1.8.6.

Thank you for your help

Bo