VMD-L Mailing List

From: sunyeping (sunyeping_at_aliyun.com)
Date: Sun Sep 27 2015 - 13:03:32 CDT

I whould suppliment something about this problem: This Segmentation fault (core dumped) occurred after I installed pymol using "yum install pymol". Before that VMD can be openen normally.And I have tried to run gdb to investigate this Segmentation fault, and the output is: GNU gdb (GDB) Red Hat Enterprise Linux (7.2-83.el6) Copyright (C) 2010 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html> This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law.  Type "show copying" and "show warranty" for details. This GDB was configured as "x86_64-redhat-linux-gnu". For bug reporting instructions, please see: <http://www.gnu.org/software/gdb/bugs/>... "/app/build/vmd-1.9.2/bin/vmd": not in executable format: File format not recognized [New Thread 13122] [New Thread 13126] [New Thread 13123] [New Thread 13125] [New Thread 13124] Core was generated by `/app/build/vmd-1.9.2/vmd_LINUXAMD64'. Program terminated with signal 11, Segmentation fault. #0  0x00000033aa650346 in ?? () (gdb) where #0  0x00000033aa650346 in ?? () #1  0x0000000001e510b0 in ?? () #2  0x0000000000000000 in ?? () Thank you a lot! Yeping Sun Institute of Microbiology, Chinese Academy of Sciences ------------------------------------------------------------------From:孙业平 <sunyeping_at_aliyun.com>Send Time:2015年9月28日(星期一) 01:18To:vmd-l <vmd-l_at_ks.uiuc.edu>Subject:vmd-l: Why can VMD not be opened? Dear VMD users, I just installed VMD-1.9.2 on the CentOS system. But when I input the command "vmd" in the terminal,  a normal VMD viewer window and a grep MVD main window (without any work or graph) appear, and only a few seconds later, both of these windows disapper. The last few lines in the termial are: Info) Multithreading available, 6 CPUs detected. Info) Free system memory: 22935MB (95%) Info) Creating CUDA device pool and initializing hardware.. Info) Detected 2 available CUDA accelerators: Info) [0] Tesla C2050        14 SM_2.0 @ 1.15 GHz, 2.6GB RAM, KTO, AE2, ZCP Info) [1] Tesla C2050        14 SM_2.0 @ 1.15 GHz, 2.6GB RAM, AE2, ZCP Info) Detected 2 available TachyonL/OptiX ray tracing accelerators Warning) Detected X11 'Composite' extension: if incorrect display occurs Warning) try disabling this X server option.  Most OpenGL drivers Warning) disable stereoscopic display when 'Composite' is enabled. Info) OpenGL renderer: Tesla C2050/PCIe/SSE2 Info)   Features: STENCIL MSAA(4) MDE CVA MTX NPOT PP PS GLSL(OVFGS) Info)   Full GLSL rendering mode is available. Info)   Textures: 2-D (16384x16384), 3-D (2048x2048x2048), Multitexture (4) Info) Dynamically loaded 2 plugins in directory: Info) /app/build/vmd-1.9.2/lib/vmd/plugins/LINUXAMD64/molfile Segmentation fault (core dumped)  Could anyone help me with this? Best regards. Yeping Sun Institute of Microbiology, Chinese Academy of Sciences