VMD-L Mailing List

From: jrhau lung (jrhaulung_at_gmail.com)
Date: Mon Jun 12 2017 - 05:07:14 CDT

Dear Roshan:
    You can use UCSF chimera, fetch the structure by input ID (1bna). All
phosphate can be selected by select -> chemistry -> functional group ->
phosphate
And save the coordinate of selected phoaphate by file -> save PDB -> use
the save select atom only. It will save what you want. Hope this help.

sincerely, Jrhau

2017-06-12 17:19 GMT+08:00 Roshan Shrestha <roshanpra_at_gmail.com>:

> I want to extract coordinates for Phosphate from the pdb file, to be
> specific from 1bna.pdb inorder to create the pdb file of phosphate for its
> simulation. Is there any way to do it ? Thanks
>
> --
> Roshan Shrestha
> Graduate Student
> Central Department of Physics,Tribhuvan University
> Kathmandu,Nepal
>
>
>