VMD-L Mailing List

From: Alberto Sergio Garay (sgaray_at_fbcb.unl.edu.ar)
Date: Wed Jun 03 2009 - 14:17:07 CDT

Dear Axel

I have just upload the gro and xtc(short) files of my simulation and
the tcl/tk script (my_pbc_to_send_to_vmd_list.scr) in the public
biocore project. As you suggest I create a folder called testfiles. To
run the script you should source it and then write:

rsel 49 10

Doing this you will be selecting the residue 49 (dmpc molecule) and
all the molecules within a radio of 10 A.

Before run it I had busy 190 Mb of ram memory and after run it I had 540 Mb.

The problem is: I need to run the script on a long trayectory which
consumes all the memory of my pc.

Could you give any suggestion of how to solve this problem?

Thank you in advance.

Sergio 

-- 
Dr. Sergio Garay
Facultad de Bioquimica y Cs. Biológicas
Universidad Nacional del Litoral
Santa Fe - Argentina
C.C. 242 - Ciudad Universitaria - C.P. S3000ZAA
Argentina
Ph. +54 (342) 4575-213
Fax. +54 (342) 4575-221