VMD-L Mailing List

From: Andres Morales N (andresmoralesn2_at_hotmail.com)
Date: Tue Jul 28 2009 - 00:34:43 CDT

Dear VMD´s users:

 

I am relative new using VMD. So I have a question:

Now I am trying to build an Energy Lanscape for a protein. I have .dcd file form it, also I have tow principal coordinates that characterize each frame, then I need an estimation of total energy of each one. My question is, Is that a good idea to use NAMDEnergy to calculate this Energy approximation??

 

Thanks for your suggestions

 

 

Andres

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