VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Thu Jun 16 2016 - 19:39:05 CDT

Richard,
  What about an error printed in the text console, that's what
I'm looking for in particular.

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu

On Thu, Jun 16, 2016 at 09:53:11PM +0000, Richard Wood wrote:
> "Unable to load molecule."
>
>
> ________________________________________
> From: John Stone [johns_at_ks.uiuc.edu]
> Sent: Thursday, June 16, 2016 3:02 PM
> To: Richard Wood
> Cc: vmd-l_at_ks.uiuc.edu
> Subject: Re: vmd-l: Can't read DCD files generated using NAMD.
>
> Richard,
> Does VMD emit any particular error text when you try to load
> the file? It is possible that the file has been corrupted and
> the DCD header or one of the timestep markers has corruption
> that causes VMD to refuse to read it.
>
> Cheers,
> John Stone
> vmd_at_ks.uiuc.edu
>
> On Thu, Jun 16, 2016 at 04:12:53PM +0000, Richard Wood wrote:
> > I'm running some energy minimizations using NAMD and saving the
> > trajectories. Up until today, I was able to read these into VMD; as of
> > this morning, I am not able to and I don't know what the problem is. I've
> > not changed anything in the config file other than the names of the input
> > and output files.
> > Help!
> > Richard
>
> --
> NIH Center for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349
> http://www.ks.uiuc.edu/Research/vmd/ 

-- 
NIH Center for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
http://www.ks.uiuc.edu/~johns/           Phone: 217-244-3349
http://www.ks.uiuc.edu/Research/vmd/