VMD-L Mailing List
From: John Stone (johns_at_ks.uiuc.edu)
Date: Fri Feb 11 2011 - 12:49:23 CST
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Hi,
You can also show both files (both "frames") at the same time using
the "trajectory" tab in the graphical representations window, and
using 0:N where "N" is the last frame number - 1.
Cheers,
John
On Sat, Feb 12, 2011 at 12:50:31AM +0800, Joyce Tan wrote:
> Hi San,
>
> When I load it, it shows that there is only one frame which I do find it
> weird.
> But I've tried splitting the file and it works. Thx
>
> Joyce
>
> On Sat, Feb 12, 2011 at 12:39 AM, santhu kumar <mesanthu_at_gmail.com> wrote:
>
> Hi
>
> VMD is showing both the molecules as different frames ..
> The simplest way to see them both at the same time is to split the
> multimodel PDB file into 2 different files ..
>
> Hope it helps,
> San
>
> On Fri, Feb 11, 2011 at 9:56 AM, Joyce Tan <joyce.tankh_at_gmail.com>
> wrote:
>
> Hi,
> I've used g_confrms from gromacs to compare two structures with the
> following command line -
>
> g_confrms -f1 1OMB.pdb -f2 md.gro -o fit.pdb
>
> fit.pdb is the output file which would show the 2 structures
> superimposed on each other. But when I visualised it with vmd. I can
> only see one structure.
>
> Any idea what's going on? I hereby attached part of the generated
> fit.pdb.
>
> All suggestions are welcomed.
>
> Regards,
> Joyce
-- NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801 Email: johns_at_ks.uiuc.edu Phone: 217-244-3349 WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
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