VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Mon Feb 12 2007 - 12:01:58 CST

Hi,
  Another option would be to use the Multiseq plugin, which may
to be able to do alignments of this sort.

  John

On Mon, Feb 12, 2007 at 11:58:12AM -0600, JC Gumbart wrote:
> No, it doesn't, and I am not sure if such a problem is well-defined
> even. Your best bet would be to make selections of a certain subset
> of relevant atoms of the same number and then align based on those.
>
> On Feb 12, 2007, at 11:53 AM, namd vmd wrote:
>
> >Does VMD allow structural alignment of two proteins with different
> >number of residues ? 

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