From: Leonardo Trabuco (ltrabuco_at_ks.uiuc.edu)
Date: Mon Feb 12 2007 - 12:05:28 CST

On Mon, Feb 12, 2007 at 06:53:49PM +0100, namd vmd wrote:
> Does VMD allow structural alignment of two proteins with different number of
> residues ?

You can do that with the STAMP structural alignment tool available in
multiseq. Go to Extensions->Analysis->MultiSeq and then find STAMP in
the 'Tools' menu.

Cheers,
Leo

-- 
Leonardo Trabuco, Ph.D. student
Theoretical and Computational Biophysics Group
University of Illinois at Urbana-Champaign