VMD-L Mailing List

From: Jian Zou (jianzou_at_gmail.com)
Date: Fri May 16 2008 - 15:23:46 CDT

split the trajectory or write a simple code by yourself.

tcl is poor on math, without a doubt.

By the way, is it "20k frames" instead of 20?

On Fri, May 16, 2008 at 3:34 PM, Alberto Sergio Garay
<sgaray_at_fbcb.unl.edu.ar> wrote:
> Hi
>
> I am using VMD to calculate a cylindrical density around a particular
> molecule in a lipid bilayer model. I have 10 ns gromacs trajectory (20.000
> frames) to study. My script is not so complicated to take so long time to
> finish its task. Is it OK that the hard disk increases its work as the
> number of frames increases?. Sometimes the PC hang up. I am working in a
> Intel core2duo PC, with 2 Gb of RAM memory under Fedora core 6 linux OS.
> Is there any web site where I can take some pieces of advice to improve my
> tcl/tk scripting?
>
> Thank you in advance
> --
> Dr. Sergio Garay
> Facultad de Bioquimica y Cs. Biológicas
> Universidad Nacional del Litoral
> Santa Fe - Argentina
> C.C. 242 - Ciudad Universitaria - C.P. S3000ZAA
> Argentina
> Ph. +54 (342) 4575-213
> Fax. +54 (342) 4575-221
>
>
>
>
>
>
>