VMD-L Mailing List
From: Ramya Gamini (ramyabhargavi_at_gmail.com)
Date: Fri Aug 29 2008 - 14:28:15 CDT
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Hi Aneesh
Your selection should basically exclude "back bone"
If you are wanting to select all side chains in a protein, then it should be
- "protein and not (name CA HA N HT1 HT2 HT3 C OT1 OT2)"
I guess, this is what you are asking for.
best
Ramya
On Fri, Aug 29, 2008 at 7:26 AM, aneesh cna <aneeshcna_at_gmail.com> wrote:
> Repected VMD users,
>
>
> If I am writning script for finding the center of mass for side
> chains in a protein, how my script should find the side chains?.
>
> Thanks in advance
> Aneesh
>
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