VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Thu Oct 10 2013 - 22:24:05 CDT

Hi,
  Your description seems to indicate that your problem is with charmm-gui
and not VMD. If the issue is indeed with use of the charmm-gui tool,
you would likely have much better luck in getting help by asking the
charmm-gui developers rather than VMD-L.

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu

On Thu, Oct 10, 2013 at 10:38:11AM -0700, Ramin Ekhteiari wrote:
> Hi,
> I am trying to embed protein that includes a ligand into the membrane
> bilayer via charmm-gui server.. but during generating, it removes my
> ligand.
> would you please advise me on how to solve it?
> would be grateful for any help.
> Cheers,
> Ramin 

-- 
NIH Center for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
http://www.ks.uiuc.edu/~johns/           Phone: 217-244-3349
http://www.ks.uiuc.edu/Research/vmd/