From: bo baker (bo.bybaker_at_gmail.com)
Date: Sat Feb 28 2009 - 03:44:06 CST

Dear VMD:

I would like to delete the ligands from the trajectories. Is there a
way to do so?

I know that one can delete residues from one protein structure, such as:

set sel [atomselect top "not (resname FAD FMN NAP)"]
$sel writepdb test1.pdb

Just wonder how it works with a set of structures, such as trajectory
once they are all loaded?

Thank you for your advice

Bo