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From: Oliver Schmetzer (oliver.schmetzer_at_gmx.net)
Date: Fri Aug 03 2012 - 11:33:21 CDT
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Dear All,
I use VMD since many years, however I now got an electrostatic potential
calculation which i want to open in VMD. My bioinformatics course is long
ago, so I need some help. The file I have is a efvet XML file or also a
molscript file and I want to convert one of it to PDB. It was done form the
eF-surf server at PDB-japan as all other servers crashed on my model. Is
there any idea how to convert it?
I can open it in JV viewer, however there are so many bugs in this program
that I cant do anything.
Btw: maybe anyone has experiences with peptide to protein docking (I have
several peptides which I want to dock and it will take long, the only idea I
have is to use direct charge interaction as constrained as the charge is
extreme)
Many thanks,
Oliver
Dr. Oliver Schmetzer
Max-Delbrück-Centrum for molecular medicine
Molecular Immunotherapy
Robert-Roessle-Str. 10
13125 Berlin
Germany
Charité University Medicine Berlin
Clinic for Hematology and Oncology
Augustenburger Platz 1
13353 Berlin
Germany
private address:
Jaegerstr. 70
10117 Berlin
Germany
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30 9406 2830
private home: +49 30 7407 8037 lab office: +49 30
9406 2695
private fax: +49 30 7407 8038 lab Fax: +49 30
9406 2698
e-mail: <mailto:oliver.schmetzer_at_gmx.net>
oliver.schmetzer_at_gmx.net
<mailto:oliver.schmetzer_at_charite.de> oliver.schmetzer_at_charite.de
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