From: Thomas C Bishop (bishop_at_latech.edu)
Date: Tue Dec 17 2013 - 20:24:26 CST

tomek,
the selection criteria in vmd is very powerful
you can select simple slices like

x < 10 and x > 8
or maybe just a slice of water but leave the protein and/or dna
x < 10 and x > 8 and water

( or use y's and z's )
but it also supports pretty much any math function so you can do all
kinds of crazy things.

see graphics -> representations on the pull down menus
or the atomselect commands

tom

On 12/17/2013 11:09 AM, Tomek Wlodarski wrote:
> Hi,
>
> I was wondering if it is possible in vmd to create slice image, where
> cut section is filled with one color, something like this figure in pymol:
>
> http://www.pymolwiki.org/index.php/File:Image_merged.png
>
> Thank.
> Best,
>
> tomek

-- 
*******************************
    Thomas C. Bishop
     Tel: 318-257-5209
     Fax: 318-257-3823
    www.latech.edu/~bishop
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