VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Thu Jan 03 2013 - 09:59:07 CST

Maria,
  Thanks for the note. I'm glad that the latest driver has cured the problem.
I also appreciate you letting us know. This is very helpful in case
anyone else runs into the same problem.

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu

On Thu, Jan 03, 2013 at 11:24:09AM +0100, maria goranovic wrote:
> Hi John
> the problem got fixed with the latest driver. thank you for the help
>
> On Fri, Dec 21, 2012 at 10:19 AM, maria goranovic
> <mariagoranovic_at_gmail.com> wrote:
>
> Will try, and get back to you.
>
> On Thu, Dec 20, 2012 at 10:33 PM, John Stone <johns_at_ks.uiuc.edu> wrote:
>
> Hi,
> Can you try out the newer NVIDIA driver version 310.19 and see
> if that cures your problem or not?
>
> Cheers,
> John Stone
> vmd_at_ks.uiuc.edu
> On Thu, Dec 20, 2012 at 04:53:05PM +0100, maria goranovic wrote:
> > Hi John
> >
> > Hi,
> > Can you send us the text messages that VMD prints in the
> > text console when it starts up? I'm curious to see if it has
> > any warnings about the OpenGL driver, and/or what driver is
> > reported as active.
> >
> > rlwrap: Command not found.
> > Info) VMD for LINUXAMD64, version 1.9.1 (February 1, 2012)
> > Info) http://www.ks.uiuc.edu/Research/vmd/
> > Info) Email questions and bug reports to vmd_at_ks.uiuc.edu
> > Info) Please include this reference in published work using VMD:
> > Info) Humphrey, W., Dalke, A. and Schulten, K., `VMD - Visual
> > Info) Molecular Dynamics', J. Molec. Graphics 1996, 14.1,
> 33-38.
> > Info)
> -------------------------------------------------------------
> > Info) Multithreading available, 12 CPUs detected.
> > Info) Free system memory: 62616MB (98%)
> > Info) Creating CUDA device pool and initializing hardware...
> > Info) Detected 1 available CUDA accelerator:
> > Info) [0] Quadro 2000D 4 SM_2.1 @ 1.25 GHz, 1.0GB RAM,
> KTO, OIO,
> > ZCP
> > Info) OpenGL renderer: Quadro 2000D/PCIe/SSE2
> > Info) Features: STENCIL MSAA(16) MDE MTX NPOT PP PS
> > Info) GLSL rendering mode is NOT available.
> > Info) Textures: 2-D (18x17), 3-D (18x17x18), Multitexture (4)
> > Info) Dynamically loaded 2 plugins in directory:
> > Info) /usr/local/lib/vmd/plugins/LINUXAMD64/molfile
> > /usr/local/lib/vmd/scripts/tcl8.5 /usr/local/lib/vmd/scripts
> > /usr/local/lib/lib /Projects/johns/tcl/8.5.6/lib_LINUXAMD64/lib
> > /usr/local/lib/vmd/scripts/tk8.5
> /usr/local/lib/vmd/scripts/tk8.5/ttk
> > /usr/local/lib/vmd/scripts/vmd
> /usr/local/lib/vmd/plugins/LINUXAMD64/tcl
> > /usr/$
> > /usr/local/lib/vmd/scripts/tcl8.5 /usr/local/lib/vmd/scripts
> > /usr/local/lib/lib /Projects/johns/tcl/8.5.6/lib_LINUXAMD64/lib
> > /usr/local/lib/vmd/scripts/tk8.5
> /usr/local/lib/vmd/scripts/tk8.5/ttk
> > /usr/local/lib/vmd/scripts/vmd
> /usr/local/lib/vmd/plugins/LINUXAMD64/tcl
> > /usr/$
> > after#0
> >
> >
> >
> > What output do you get if you run this command?:
> > cat /proc/driver/nvidia/version
> >
> > NVRM version: NVIDIA UNIX x86_64 Kernel Module 304.51 Tue Sep
> 18
> > 17:16:56 PDT 2012
> > GCC version: gcc version 4.6.3 (Ubuntu/Linaro 4.6.3-1ubuntu5)
> >
> >
> > Cheers,
> > John Stone
> > vmd_at_ks.uiuc.edu
> > On Thu, Dec 20, 2012 at 11:48:03AM +0100, maria goranovic
> wrote:
> > > Hi
> > > I am using VMD 1.9.1 on Ubuntu 12.04.1 LTS. VMD was
> working fine
> > till a
> > > while ago.
> > > Now, when I load up a molecule, I do not see anything
> displayed as
> > Lines.
> > > The display is fine if I use any other representation. I
> have made
> > no
> > > changes to my .vmdrc file. It seems that this is a result
> of some
> > ubuntu
> > > software upgrade.
> > > I am also using Nvidia twinview.
> > > Has anyone else had a similar problem?
> > > --
> > > Maria G.
> > > Technical University of Denmark
> > > Copenhagen
> >
> > --
> > NIH Center for Macromolecular Modeling and Bioinformatics
> > Beckman Institute for Advanced Science and Technology
> > University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> > http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349
> > http://www.ks.uiuc.edu/Research/vmd/ Fax: 217-244-6078
> >
> > --
> > Maria G.
> > Technical University of Denmark
> > Copenhagen
>
> --
> NIH Center for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349
> http://www.ks.uiuc.edu/Research/vmd/ Fax: 217-244-6078
>
> --
> Maria G.
> Technical University of Denmark
> Copenhagen
>
> --
> Maria G.
> Technical University of Denmark
> Copenhagen 

-- 
NIH Center for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
http://www.ks.uiuc.edu/~johns/           Phone: 217-244-3349
http://www.ks.uiuc.edu/Research/vmd/       Fax: 217-244-6078