VMD-L Mailing List

From: maria goranovic (mariagoranovic_at_gmail.com)
Date: Thu Jan 03 2013 - 04:24:09 CST

Hi John

the problem got fixed with the latest driver. thank you for the help

On Fri, Dec 21, 2012 at 10:19 AM, maria goranovic
<mariagoranovic_at_gmail.com>wrote:

> Will try, and get back to you.
>
>
> On Thu, Dec 20, 2012 at 10:33 PM, John Stone <johns_at_ks.uiuc.edu> wrote:
>
>>
>> Hi,
>> Can you try out the newer NVIDIA driver version 310.19 and see
>> if that cures your problem or not?
>>
>> Cheers,
>> John Stone
>> vmd_at_ks.uiuc.edu
>>
>> On Thu, Dec 20, 2012 at 04:53:05PM +0100, maria goranovic wrote:
>> > Hi John
>> >
>> > Hi,
>> > Can you send us the text messages that VMD prints in the
>> > text console when it starts up? I'm curious to see if it has
>> > any warnings about the OpenGL driver, and/or what driver is
>> > reported as active.
>> >
>> > rlwrap: Command not found.
>> > Info) VMD for LINUXAMD64, version 1.9.1 (February 1, 2012)
>> > Info) http://www.ks.uiuc.edu/Research/vmd/
>> > Info) Email questions and bug reports to vmd_at_ks.uiuc.edu
>> > Info) Please include this reference in published work using VMD:
>> > Info) Humphrey, W., Dalke, A. and Schulten, K., `VMD - Visual
>> > Info) Molecular Dynamics', J. Molec. Graphics 1996, 14.1, 33-38.
>> > Info) -------------------------------------------------------------
>> > Info) Multithreading available, 12 CPUs detected.
>> > Info) Free system memory: 62616MB (98%)
>> > Info) Creating CUDA device pool and initializing hardware...
>> > Info) Detected 1 available CUDA accelerator:
>> > Info) [0] Quadro 2000D 4 SM_2.1 @ 1.25 GHz, 1.0GB RAM, KTO,
>> OIO,
>> > ZCP
>> > Info) OpenGL renderer: Quadro 2000D/PCIe/SSE2
>> > Info) Features: STENCIL MSAA(16) MDE MTX NPOT PP PS
>> > Info) GLSL rendering mode is NOT available.
>> > Info) Textures: 2-D (18x17), 3-D (18x17x18), Multitexture (4)
>> > Info) Dynamically loaded 2 plugins in directory:
>> > Info) /usr/local/lib/vmd/plugins/LINUXAMD64/molfile
>> > /usr/local/lib/vmd/scripts/tcl8.5 /usr/local/lib/vmd/scripts
>> > /usr/local/lib/lib /Projects/johns/tcl/8.5.6/lib_LINUXAMD64/lib
>> > /usr/local/lib/vmd/scripts/tk8.5 /usr/local/lib/vmd/scripts/tk8.5/ttk
>> > /usr/local/lib/vmd/scripts/vmd
>> /usr/local/lib/vmd/plugins/LINUXAMD64/tcl
>> > /usr/$
>> > /usr/local/lib/vmd/scripts/tcl8.5 /usr/local/lib/vmd/scripts
>> > /usr/local/lib/lib /Projects/johns/tcl/8.5.6/lib_LINUXAMD64/lib
>> > /usr/local/lib/vmd/scripts/tk8.5 /usr/local/lib/vmd/scripts/tk8.5/ttk
>> > /usr/local/lib/vmd/scripts/vmd
>> /usr/local/lib/vmd/plugins/LINUXAMD64/tcl
>> > /usr/$
>> > after#0
>> >
>> >
>> >
>> > What output do you get if you run this command?:
>> > cat /proc/driver/nvidia/version
>> >
>> > NVRM version: NVIDIA UNIX x86_64 Kernel Module 304.51 Tue Sep 18
>> > 17:16:56 PDT 2012
>> > GCC version: gcc version 4.6.3 (Ubuntu/Linaro 4.6.3-1ubuntu5)
>> >
>> >
>> > Cheers,
>> > John Stone
>> > vmd_at_ks.uiuc.edu
>> > On Thu, Dec 20, 2012 at 11:48:03AM +0100, maria goranovic wrote:
>> > > Hi
>> > > I am using VMD 1.9.1 on Ubuntu 12.04.1 LTS. VMD was working
>> fine
>> > till a
>> > > while ago.
>> > > Now, when I load up a molecule, I do not see anything
>> displayed as
>> > Lines.
>> > > The display is fine if I use any other representation. I have
>> made
>> > no
>> > > changes to my .vmdrc file. It seems that this is a result of
>> some
>> > ubuntu
>> > > software upgrade.
>> > > I am also using Nvidia twinview.
>> > > Has anyone else had a similar problem?
>> > > --
>> > > Maria G.
>> > > Technical University of Denmark
>> > > Copenhagen
>> >
>> > --
>> > NIH Center for Macromolecular Modeling and Bioinformatics
>> > Beckman Institute for Advanced Science and Technology
>> > University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
>> > http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349
>> > http://www.ks.uiuc.edu/Research/vmd/ Fax: 217-244-6078
>> >
>> > --
>> > Maria G.
>> > Technical University of Denmark
>> > Copenhagen
>>
>> --
>> NIH Center for Macromolecular Modeling and Bioinformatics
>> Beckman Institute for Advanced Science and Technology
>> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
>> http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349
>> http://www.ks.uiuc.edu/Research/vmd/ Fax: 217-244-6078
>>
>
>
>
> --
> Maria G.
> Technical University of Denmark
> Copenhagen
> 

-- 
Maria G.
Technical University of Denmark
Copenhagen