VMD-L Mailing List

From: aneesh cna (aneeshcna_at_gmail.com)
Date: Wed Jan 02 2013 - 23:52:45 CST

Hi,

Thanks for your immediate reply. Below is the steps I followed while
loading the trajectories.

1. Load the respective pdb file into vmd ( in command line ' vmd file.pdb' )

2. From the VMD main window, go to File > Load data into molecule, and load
the respective trajectories ( in my case, I am using trajectories in Amber
format with periodic box and a single '.crd' file contain 5000 frames)

3. After few frames has loaded, I am try to abort loading the frames by
using the 'Abort File I/O' function which can be accessed by going to
Molecule > Abort File I/O from VMD main window. Unfortunately, 'Abort File
I/O' function was not accessible while the trajectories being loading (
i.e, I can able use this function only after all the 5000 frames has
loaded).

Hope I made it clear now and let me if you need any more details.

Thanks in advance

Regards
Aneesh

On Thu, Jan 3, 2013 at 2:07 AM, John Stone <johns_at_ks.uiuc.edu> wrote:

> Hi,
> When you loaded the trajectory, did you select "load all at once",
> or not? If you can tell me more precisely the steps you took, that may
> make it easier for me to resolve the problem you are having. Another thing
> to try is to see if you have this problem with one of the latest VMD 1.9.2
> test versions, available by following the steps here:
> http://www.ks.uiuc.edu/Research/vmd/alpha/
>
> Cheers,
> John Stone
> vmd_at_ks.uiuc.edu
>
> On Fri, Dec 28, 2012 at 04:29:56PM +0530, aneesh cna wrote:
> > Dear VMD users,
> >
> > I am using VMD 1.9.1 in Ubuntu 12. 04. I was trying to abort the
> loading
> > of trajectories halfway through using the 'Abort File I/O' option
> under
> > 'Molecule' in the VMD main window. Unfortunately, the 'Abort File
> I/O'
> > key is not working while the trajectories being loading. Can anyone
> help
> > me to figure out this.
> >
> > Thanks in advance
> >
> > Regards
> > Aneesh
>
> --
> NIH Center for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349
> http://www.ks.uiuc.edu/Research/vmd/ Fax: 217-244-6078
>