VMD-L Mailing List

From: maria goranovic (mariagoranovic_at_gmail.com)
Date: Wed Oct 31 2007 - 08:48:29 CDT

Hi

I have a multi-segment protein which needs to be aligned along the bilayer
normal. I have information about the angle between the bilayer normal and
one of the helices of the protein. Once I have the principal axes of the
protein aligned with the coordinates axes, how can I go about using the
angle information to reorient the protein in the membrane ?

Thanks a million for the suggestions,

-Maria 

-- 
Maria G.
Technical University of Denmark
Copenhagen